Gene Daud_0929 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_0929 
Symbol 
ID6026649 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand
Start bp990029 
End bp990946 
Gene Length918 bp 
Protein Length305 aa 
Translation table11 
GC content66% 
IMG OID641593741 
ProducttRNA pseudouridine synthase B 
Protein accessionYP_001717074 
Protein GI169831092 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0130] Pseudouridine synthase 
TIGRFAM ID[TIGR00431] tRNA pseudouridine 55 synthase 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.590741 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGAAGGAG TCCTTAACGT CCTTAAACCT CCCGGGATGA CCTCCCACGA CGTGGTCGGT 
TTCCTGAGAC GCAGACTGGG GATCAGGAAG GTTGGCCATA CCGGCACGCT GGACCCGTTG
GCCGCCGGGG TGCTGGTCGT CTGCGTGGGC CGGGCGACCA GGATCGCTCA GTATATTCCG
GATGACAAGG TCTACCGCGC CGAACTGGTC CTGGGAATCA CCACCACGAC CGGCGACGCT
CAGGGTGACG TTCAACGGGT CGAGCCCCTT CCGGACGGCC TGGACTTGGA ACGGCTGGAG
GAGGTGCTCG CCGGGTTTGC CGGCCCGGGG TTGCAGGTGC CGCCGATGAC GTCGGCGCGC
AAGGTGAAGG GGAAAAAGTT GTACGAGTTG GCGCGCCGGG GGGTGGAGGT GCCGCGTGAA
GCCCGCCCGG TCATGATCCA CCGCCTCCGC CTGGTGCACA CCAGGTTCGA GCGCAGCGCG
CACCCGCGAG CGCTCATCGA TGTGTCCTGC AGCAAGGGTA CGTATGTCCG CACCCTGTGT
GCCGACATCG GAGCGCGGCT GGGCTGCGGG GCCTATATGT CTTTCCTGGT GCGGTCGGCG
GTAGGGCCGT TTCCAATCAC GGCGGCACGG ACCCTAGAGG AGCTCGAGGG ATCGCTGGCC
GGGGAGTTGA TCGCGGTGGA TACCGCCCTC GGCCATCTGC CGGCGGTGCT CGTTCATCCC
GGAGCGTCAC GGGCCGTTCT GTCCGGGAGA GCCCTCTATC CTCCCGGAAT CGCCGCGGGC
CCCAGCCCGA AAGAAGTAGA CGGGTATGTG CGCCTGCGGG ACGAAACGGG TCTTTTAGCC
GTGGCGAAGC CGCTCGCTGT GAGAGAGTCC CCGGAGCCCG TGGCTTTTCA ACCGGTCTGG
GTGCGGGGCG GAGCTTAG
 
Protein sequence
MEGVLNVLKP PGMTSHDVVG FLRRRLGIRK VGHTGTLDPL AAGVLVVCVG RATRIAQYIP 
DDKVYRAELV LGITTTTGDA QGDVQRVEPL PDGLDLERLE EVLAGFAGPG LQVPPMTSAR
KVKGKKLYEL ARRGVEVPRE ARPVMIHRLR LVHTRFERSA HPRALIDVSC SKGTYVRTLC
ADIGARLGCG AYMSFLVRSA VGPFPITAAR TLEELEGSLA GELIAVDTAL GHLPAVLVHP
GASRAVLSGR ALYPPGIAAG PSPKEVDGYV RLRDETGLLA VAKPLAVRES PEPVAFQPVW
VRGGA