| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0901 |
|---|
| Symbol | |
|---|
| ID | 6026376 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | + |
|---|
| Start bp | 961731 |
|---|
| End bp | 963869 |
|---|
| Gene Length | 2139 bp |
|---|
| Protein Length | 712 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641593713 |
|---|
| Product | (p)ppGpp synthetase I, SpoT/RelA |
|---|
| Protein accession | YP_001717046 |
|---|
| Protein GI | 169831064 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
|---|
| TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0988529 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGATTG AGACGCTGGT GGAAAGGATC CGGCAATACA ACCCGCGAGT CGATGTTTCC
TTTATTCAGC GGGCGTACGA GTTCGCCCAG GAGGCGCACC ACAACCAAAA GCGGATTTCC
GGTGAGGACT TCATCGTTCA CCCCCTGGAA GTGGCGCAGA TTCTGGCCGA ACTTGAACTC
GACCTGGAAA GCGTAGTCGG GGGTCTTTTG CACGACGTCA TAGAAGACGC CGGGATCGAA
CTGTGCGTCA TCCGGGAGGA GTTCGGCGAC GAGGTCGCCC TGCTCGTCGA CGGGGTCACC
AAGCTGAGGC GCCTGGCCTA CCGTTCCAAG GAGGAGCAGC AGGCCGAAAA CCTGCGGAAA
ATGCTCCTGG CTATGGCCAA GGACGTGCGG GTGATCCTGA TCAAGCTGGC CGACCGCCTC
CACAACCTGC GGACCCTCCA GTACCACACC GTGCCCAAAC AGCGCGAAAT CGCCCAGGAA
ACCCTGGAAA TATTCGCTCC TTTGGCCCAC CGCCTCGGTA TCTACCGGAT CAAATCTGAA
TTGGAAGACA TCGCTTTTCG TTTCCGGGAA CCGGAGCGGC ACGAGGAACT GACCCGGCGC
CTGAGCGCGA CCCGCAGCGT GCGCGAAGGC TACATCGGGG GCGTGATCAA AATCTTGCAG
GAAAAGCTGG GCGGCATGGG AATCACCGCG GACATCCAGG GCCGACCCAA GCACCTGTAC
AGCATCTACC AGAAGATGTT GGCTCAGGAA AAAGACCTGG AGGAAATCTT CGACATCCTC
GGCATCCGGA TCCTGGTGGA GTCGGTCAAA GACTGCTACG CCACCCTCGG GGTGGTCCAC
ACCCTCTGGA AGCCGGTCCC CGGGCGTTTC AAGGACTATA TCGCCATGCC CAAGTCGAAT
ATGTACCAAT CGCTGCACAC TTCCGTGGTC GGCCCCGAAG GCGAGGTGCT GGAAATCCAG
GTCCGCACCT GGGACATGCA CCGTACCGCC GAGTACGGCA TCGCCGCGCA CTGGCGCTAT
AAATCCGGGA CCCGCGCCGA CCCCGCGTTC GACGAAAAAC TAGCCTGGTT GAGACAGCTC
CTGGAGTGGC AGCACGAGTT GCGGGACGCC CGCGAGTTCA TGGAAACCCT GAAGATCGAC
CTGTTCGCCG ATTCGGTCTA CGTCTTCACC CCGGCGGGCG ACGTGCTGGA ATTGCCTGCG
GGTTCGATAC CGTTGGACTT CGCCTACCGC ATCCACACCG ACCTTGGTCA CCGGAGCATC
GGGGCCCGGG TGAACGGCAA ACTGGTGCCT TTGAACTACC AGTTAAAAAC CGGCGACATC
GTCGACATCA TCAAGGGCAA ACAGGCCGGC CCCAGCCGGG ACTGGCTGAA CCTGGTAAAG
ACTCCCCAGG CGAAGACCAA GATCCGTCAG TGGTTCAAAA AGGAACAGCG CGAGGAGAAC
ATCCAGCGCG GCCGGGAGGC CCTGGAGCGC GAGGCGCGGA AGCAGGGTTT GGAATTGGAG
CATCTGCGGG GCGAACGCGT GCTGGAACTG GGCAGGAAGT ACAACTTACA CACCATCGAA
GACGTCCACG CGGCGGTGGC GCTCGGCGTG GTGACGGCCA ACACCCTGGT GGCGCGTTTG
AAAGAACTGC TCCGGCCCGT GCCCGCGGAA GTTCAGCTTC CGGACGTAGT CCTTGAAAAA
CGGCGGTCTC CGGCTACCCA GGGGGTACGG GTCCTAGGGG CCGACAACCT GCTGGTGCGT
CTGGCTCACT GCTGCAACCC GGTGCCCGGG GACGCCATTG TGGGCTACAT CACCCGGGGG
CGCGGGGTTT CGGTGCACCG GGCGGACTGC CGCAACATCG GAGTGTGGCG GGAAAAAGAG
CGGGAACGGC TCGTGGAAGT CGTCTGGGAG AAGACCGAAA TTCCTTTCCA GATCCGGCTG
GAGATTTCGG GAATGGACCG GGCCGGCCTT TTACGCGACG TGATGAATGT GCTCAGTGAA
ATGAAGATCA GCGCCAGCTG GGTGACTGCC CGGGGCAACA AGAGCAAGAT GGCGACGATC
GCCCTGACCG TGGAAATCCG CAACCTGGAG CAATTCGACT ACCTCCGGCA AAAGATCGGC
AGAATACGGG ACGTATATGA GGTAAGGCGG GTGATCTAG
|
|---|
| Protein sequence | MPIETLVERI RQYNPRVDVS FIQRAYEFAQ EAHHNQKRIS GEDFIVHPLE VAQILAELEL
DLESVVGGLL HDVIEDAGIE LCVIREEFGD EVALLVDGVT KLRRLAYRSK EEQQAENLRK
MLLAMAKDVR VILIKLADRL HNLRTLQYHT VPKQREIAQE TLEIFAPLAH RLGIYRIKSE
LEDIAFRFRE PERHEELTRR LSATRSVREG YIGGVIKILQ EKLGGMGITA DIQGRPKHLY
SIYQKMLAQE KDLEEIFDIL GIRILVESVK DCYATLGVVH TLWKPVPGRF KDYIAMPKSN
MYQSLHTSVV GPEGEVLEIQ VRTWDMHRTA EYGIAAHWRY KSGTRADPAF DEKLAWLRQL
LEWQHELRDA REFMETLKID LFADSVYVFT PAGDVLELPA GSIPLDFAYR IHTDLGHRSI
GARVNGKLVP LNYQLKTGDI VDIIKGKQAG PSRDWLNLVK TPQAKTKIRQ WFKKEQREEN
IQRGREALER EARKQGLELE HLRGERVLEL GRKYNLHTIE DVHAAVALGV VTANTLVARL
KELLRPVPAE VQLPDVVLEK RRSPATQGVR VLGADNLLVR LAHCCNPVPG DAIVGYITRG
RGVSVHRADC RNIGVWREKE RERLVEVVWE KTEIPFQIRL EISGMDRAGL LRDVMNVLSE
MKISASWVTA RGNKSKMATI ALTVEIRNLE QFDYLRQKIG RIRDVYEVRR VI
|
|---|
| |