| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0818 |
|---|
| Symbol | |
|---|
| ID | 6026128 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | + |
|---|
| Start bp | 863295 |
|---|
| End bp | 865361 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641593628 |
|---|
| Product | RecD/TraA family helicase |
|---|
| Protein accession | YP_001716965 |
|---|
| Protein GI | 169830983 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR01448] helicase, putative, RecD/TraA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.662153 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGGAAA CCATCACCGA CACCGTAAAC CGGTTCATTT TCAAAACTGA AACCTTCGCC
ATTTTCAAGC TTGATAACAT TGTTGCGCTG GGCGATGTCG CTGGCGTTCG CGAGGGCGAC
CGCTTGACCG TTACTGGCTC CTGGCAGGAG CATCCTAAAT ACGGCAGGCA GCTCAGAGTC
GAACACTGGG AGAAACCCGT CCCGTCCACC GAAGAAGCCG CTGCAGACTT TCTTTCTTCC
GGCCTGATCA AGGGCGTGGG CCCGGTATTG GCAGAGCGAA TTGTGAGCGT TCTTGGTCCC
AATGCCGTGA GTGCGATTTT GGAAGATCCG GACGTATTGA AGAAGGTCAA GGGCATCGGC
AAAAAAGCCC CGGAAATTCG CCGTCAGCTT CAGGAGACCT ATCAAGTGCA GCAGGTCGTA
GCAGAGCTGA TACGGCTTGG GCTCACTTTG AAAACGGCGA TGAAGGCTTA CATGAAATTC
GGCCGCCCGG CCGCCGAGTA CGTTCGGAGA AACCCCTACT GCCTGACCGA ACTGGATCTG
ATCGGGTTCC ACCGGGCGGA CGACATTGCC CGGCGGGCCG GCCTGGCTCC GGATTCTTCT
TTTAGAGTCA AGGCCGGAAT ACTGTATGTT TTAAACGAAT CTCTCTGGGA CGAGGGTCAT
GCCTACCTGC CCAGGGATGA GCTCATTTCC CGCTCCCTGA CCTTGTTGAA CCATGTCGAA
AAAAGCGTGT CGCTGGACAT TGTGGAGAAA GAACTCTCCC GCCTTAAAGG GGTTCACGGA
AGTGCGGAAG TCTCTCTGGC CTGGGCCAGG GAGTACGAAG AAGAGATCGC CCGGGACGTG
AAAAGGTTGG CCCGGCAACG GTTCGATGTA CCGCCTTTGC CCCGGGATCT GATCAGGGGC
ATTGAGCTGA CCCCTGACCA GAATGCAGCA GTTAAGACTG CGCTGGAGAG CGGCTTTTCT
ATCTTGACCG GCGGTCCCGG CGTGGGCAAG ACTCAGACTG TAAGGGCGGT CATCAGGGCC
TTCGAGTTGC AGAACCCTTG GGGGGGAGTA TTTCTTTGCG CTCCTACAGG GAGAGCAGCC
AGAAGGCTTT CGGAGGTGAC CGGGCGCCAG GCGCACACCG TGCACAAGCT TCTGGGCCTC
CGGAACGGCC ACGCAGACCG CAACCGCAAA AACCCGCTGG AATGCGATCT GTTGATTTTG
GACGAAGCGA GCATGGCCTG CTTGGTTTTG ACCAAGCGCC TCCTCGAAGC CGTTCCCAAC
AACGCCAGGA TCCTTTTCGT CGGAGACGCG GACCAGCTTC CGAGCGTTGG CCCGGGCAAC
ATTTTGCGCG ATCTGCTGGA CAAAGTTCCG ACTGTCCGCC TGACCGAAAT CTTTCGCCAG
GCTGCCGAGA GCCAGATCGT AACGAACGCT CACCGGATAA ATAGGGGCCA GATGCCGCTG
ATTGACCGCT CGAAGACGGA CTTTATATTC CTGGAAAGAG AAGATCCGGA AGACATCGCA
AAGTGCGTGG CGACTTGCGC TTCCGGGATG GGTTACGATC CTTTGGACGT GCAGGTTCTT
TCGCCGATGC GAAAGGGCCC GGTGGGGACG GCTGAGCTCA ATAAGCTCAT CCAGGGGGGG
ATGTCCGGCC CCAGGGTGAA ATACGGCCAG TACGTCTTCC ATGTGGGCGA CAAGGTGATC
CACACGAAGA ACAACTATGA CAAAGGGGTT TTCAACGGCG ACATCGGGAT TATCAAGAAG
ATCAAGATGC AGCACGATGT CCTGGTGCAG TACAGCAGCG GCCTGGTTTC CTATTCCGGG
GATGACCTGA GAGAGCTTGA GCCGGCGTGG GCGGTCACGG TTCACAAGGC TCAGGGCTCT
GAGTTTAAGG CTGTAATAAT TCCCGTCACC ACCTCTCACT ATGTCATGCT GCACCGCAAC
CTGATCTATA CCGCCGTCAC CAGGGCCAGG GAAAAAGTGA TTCTGGTGGG CACGAAGAAG
GCTTTGGCCA TTGCGGTGCG CAACAACAAG CCGATTCAGC GTTACACCGC GCTTTCGGGC
CTCCTGAGAG ACGCGCCCCG CCGTTAA
|
|---|
| Protein sequence | MTETITDTVN RFIFKTETFA IFKLDNIVAL GDVAGVREGD RLTVTGSWQE HPKYGRQLRV
EHWEKPVPST EEAAADFLSS GLIKGVGPVL AERIVSVLGP NAVSAILEDP DVLKKVKGIG
KKAPEIRRQL QETYQVQQVV AELIRLGLTL KTAMKAYMKF GRPAAEYVRR NPYCLTELDL
IGFHRADDIA RRAGLAPDSS FRVKAGILYV LNESLWDEGH AYLPRDELIS RSLTLLNHVE
KSVSLDIVEK ELSRLKGVHG SAEVSLAWAR EYEEEIARDV KRLARQRFDV PPLPRDLIRG
IELTPDQNAA VKTALESGFS ILTGGPGVGK TQTVRAVIRA FELQNPWGGV FLCAPTGRAA
RRLSEVTGRQ AHTVHKLLGL RNGHADRNRK NPLECDLLIL DEASMACLVL TKRLLEAVPN
NARILFVGDA DQLPSVGPGN ILRDLLDKVP TVRLTEIFRQ AAESQIVTNA HRINRGQMPL
IDRSKTDFIF LEREDPEDIA KCVATCASGM GYDPLDVQVL SPMRKGPVGT AELNKLIQGG
MSGPRVKYGQ YVFHVGDKVI HTKNNYDKGV FNGDIGIIKK IKMQHDVLVQ YSSGLVSYSG
DDLRELEPAW AVTVHKAQGS EFKAVIIPVT TSHYVMLHRN LIYTAVTRAR EKVILVGTKK
ALAIAVRNNK PIQRYTALSG LLRDAPRR
|
|---|
| |