| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0659 |
|---|
| Symbol | |
|---|
| ID | 6027283 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | + |
|---|
| Start bp | 693186 |
|---|
| End bp | 693698 |
|---|
| Gene Length | 513 bp |
|---|
| Protein Length | 170 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 641593488 |
|---|
| Product | 16S rRNA processing protein RimM |
|---|
| Protein accession | YP_001716825 |
|---|
| Protein GI | 169830843 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0806] RimM protein, required for 16S rRNA processing |
|---|
| TIGRFAM ID | [TIGR02273] 16S rRNA processing protein RimM |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.0110024 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGTGAGG AATTGATCCT GATCGGCGAG ATCGTGAATA CCCAGGGGCA CCGCGGTGCG
GTCCGGGTGC TGCCCCTGAC GGACTTTCCC GAACGTTTCC GGCGACTGAA ATCCGTTTAC
TTGGAACAGG GGCCGGTGCG CCGGCTGGTG CACATCGGGC GGGTGTCCTA CCACAAGCGG
TTTGTGATTC TCGAGTTCCG GGAAATCCCG GATATGAACG CGGCCGAAAA GTTGAAAGGG
GCACAGCTCA AGATACACCG CTCGGAACTG GTGCCCTTGC CTGACGGCCA CCACTACGTC
TTCGATATCG TCGGCAGTTC CGTCTTCGAT GCGGAAGGGG AATACCTGGG CGTCGTGGAG
GATGTGCTGC GCACCGGGGC CAACGACGTT TACGTGGTAA AGAGCGGTGA GGGGGATTCC
CTGCTGGTCC CGGCACTTAA GACCGTGGTG CGGGACATCG ACCTGGCCCG GCGGCGCATC
ACCGTGGTCC TGCCTGAGGG GTTACGGGAA TGA
|
|---|
| Protein sequence | MSEELILIGE IVNTQGHRGA VRVLPLTDFP ERFRRLKSVY LEQGPVRRLV HIGRVSYHKR
FVILEFREIP DMNAAEKLKG AQLKIHRSEL VPLPDGHHYV FDIVGSSVFD AEGEYLGVVE
DVLRTGANDV YVVKSGEGDS LLVPALKTVV RDIDLARRRI TVVLPEGLRE
|
|---|
| |