| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0623 |
|---|
| Symbol | |
|---|
| ID | 6027072 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | + |
|---|
| Start bp | 662307 |
|---|
| End bp | 663425 |
|---|
| Gene Length | 1119 bp |
|---|
| Protein Length | 372 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641593452 |
|---|
| Product | riboflavin biosynthesis protein RibD |
|---|
| Protein accession | YP_001716789 |
|---|
| Protein GI | 169830807 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0117] Pyrimidine deaminase
[COG1985] Pyrimidine reductase, riboflavin biosynthesis |
|---|
| TIGRFAM ID | [TIGR00227] riboflavin-specific deaminase C-terminal domain
[TIGR00326] riboflavin biosynthesis protein RibD |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.000000156623 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGGACCAAG AATACATGCG GATGGCTCTG GACCTTGCTG TCAGGGCGCG GGGTCGCACC
AGTCCGAATC CCCTGGTTGG TGCGGTGGTG GTCCGGGACG GTGAGATTGT GGGCCGTGGG
TATCACGCTC GGGCCGGTCT GCCCCATGCC GAGATTGTGG CGCTTGCCCA AGCCGGTGAG
GCGGCGCGTG GGTCCACCCT CTATGTTTCT TTGGAGCCGT GCTGCCACTT CGGCCGGACC
GGTCCCTGCA CCGAGGCGGT GATTGCGGCC GGCGTGCGGC GGGTTGTGAC GGCGATGCGG
GATCCCAATC CCAAGGTTGC CGGTAGGGGT ATTGCGCGGC TGCGCGAAGC AGGCGTTGAG
GTCACCGAGG ACGTCCTCCG CGATGAGGCA GCCCGGTTGA ATGAGATATT CATTAAGTAC
ATCACCACCG GCAGGCCGTT TGTGGCCTTA AAGGTGGCCG TGAGCCTGGA TGGCAAGATC
GCCACACGCA CCGGCGATTC GCGCTGGATT ACCGGTGGGC CGGCCCGGGA ATACGCCCAC
CGGCTGCGGG ATACGTACGA CGCGCTTCTG GTGGGGCGGG GAACCGTGGT CAAAGACGAC
CCGTCTTTGA CCACCAGGCT TCCCGGAGGG GGCCGGGATC CGGTGCGGAT TGTGTTGGAC
AGCCTGGCTC GCATCCCGGA ATCGTCCCGG GTACTGTCGG GGGAATCGAC CGCCCCGGTC
ATCGTGGCGG TGACCGGGCA GGCTCCCCGG ACTCGGGTGG CCGGCCTGGA GAGCCGGGGC
GTCCAGGTGG TGCGCTGTGG GCCGGGACCG GCGGTCGATC TGGAGGTGCT GCTCCGGGAA
CTGGCCGCCC GGGAGATCAC CAGCGTGATG GTGGAAGGCG GGGCGACGGT GCACGCTTCG
TTTCTGGAGG CCCGGTTCGT TGATAAGCTG CACTGGTTTG TGGCCCCGAA GATCGTGGGC
GGGGTGGAAG CTCCGGGGGC GGTCGCCGGC CGGGGTGTGG GGCGCATATC CGAGGCGGTC
GGCCTGGAAC GGGTGCGCCG GATCGAATTG GGGAACGATT TGTGTATCGA GGGCTATCCG
GTGTGGGGGG GGGCGGCGGA TGTTCACCGG GATTATTGA
|
|---|
| Protein sequence | MDQEYMRMAL DLAVRARGRT SPNPLVGAVV VRDGEIVGRG YHARAGLPHA EIVALAQAGE
AARGSTLYVS LEPCCHFGRT GPCTEAVIAA GVRRVVTAMR DPNPKVAGRG IARLREAGVE
VTEDVLRDEA ARLNEIFIKY ITTGRPFVAL KVAVSLDGKI ATRTGDSRWI TGGPAREYAH
RLRDTYDALL VGRGTVVKDD PSLTTRLPGG GRDPVRIVLD SLARIPESSR VLSGESTAPV
IVAVTGQAPR TRVAGLESRG VQVVRCGPGP AVDLEVLLRE LAAREITSVM VEGGATVHAS
FLEARFVDKL HWFVAPKIVG GVEAPGAVAG RGVGRISEAV GLERVRRIEL GNDLCIEGYP
VWGGAADVHR DY
|
|---|
| |