Gene Daud_0617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_0617 
Symbol 
ID6026843 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand+ 
Start bp654153 
End bp655202 
Gene Length1050 bp 
Protein Length349 aa 
Translation table11 
GC content65% 
IMG OID641593446 
Product1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 
Protein accessionYP_001716783 
Protein GI169830801 
COG category[I] Lipid transport and metabolism 
COG ID[COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis 
TIGRFAM ID[TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
TTGCGCAGGA AAACACGGGC TATCCGGCTG GGTAGTGTTC AGGTCGGTGG CGGGGCCCCT 
GTTTCGGTCC AGTCCATGAC CAGCACCGAC ACCCGCGACG TGGCCGCTAC CGTGGCCCAG 
ATCCGGGAGT TGGTTGGAGT CGGCGCGGAA ATCGTCCGGG TGGCCGTGCC GGACCAGCAG 
GCGGTCCAGG CGTTGCGGCA GATCCGTGCC CAGGTGCCGG AGGTGGCGCT GGTTGCGGAC 
GTTCATTTCG ACCATCGCCT GGCCCTGGCC GCCGTCGAGG CGGGAGTGGA CGGGCTGCGC 
CTGAATCCGG GCAACATCGG CGGTCGGGAC AAGGTGGCCG AAGTGGTACG CGCGGCCAGG 
GAACGTGGCG TGCCGATCCG CGTCGGGGTC AACGCGGGTT CCCTGGACCG TAGAATCGTA 
GAGCGGTTTG GAGCCGTGAC GGCCGAGGCC ATGGTCGCCA GTGCCCTGGA ACACGTGGCC 
ATTCTGGAGG ACCTGGACTT CACGGCCGTG AAGATTTCCC TGAAAGCCAG CGATGTGCCC 
CTGACGGTGG CCGCTTACCG GCTTCTCGCC GCCAAAGTGG ACTACCCCTT CCACGTTGGT 
ATCACCGAAG CCGGTACGTT GCGCGGGGGC CTGGTGAAAT CGGCGGTCGG GATCGGTATC 
CTGCTCGCGC AAGGTATCGG AGACACCATT CGGGTTTCAT TGACCGCACC ACCCAGACAC 
GAGGTTTGGG CCGGGTACGA AATATTGAAG ACACTCGGGC TAAGACGCCG GGGCGTGGAG 
CTGATCTCCT GCCCGACGTG CGGCCGGACT GAAATCGATC TGGTCCGGAT TGCGACCGAG 
GTGGAAGAAC GCTTACAGGG TACGACCCGG GCGTTGAAGG TGGCCGTGAT GGGCTGTGTG 
GTGAACGGAC CGGGCGAAGC ACGGGAGGCC GATGTGGGCA TTGCGGGCGG AAAAGGGGTT 
GGGCTCTTGT TCCGCAAGGG AGAGCCGGTC CGTACCGTAC CGGAGTCCAA ACTGGTGGAC 
GCGCTCCTGG AGGAGATAGA GAAACTGTAG
 
Protein sequence
MRRKTRAIRL GSVQVGGGAP VSVQSMTSTD TRDVAATVAQ IRELVGVGAE IVRVAVPDQQ 
AVQALRQIRA QVPEVALVAD VHFDHRLALA AVEAGVDGLR LNPGNIGGRD KVAEVVRAAR 
ERGVPIRVGV NAGSLDRRIV ERFGAVTAEA MVASALEHVA ILEDLDFTAV KISLKASDVP 
LTVAAYRLLA AKVDYPFHVG ITEAGTLRGG LVKSAVGIGI LLAQGIGDTI RVSLTAPPRH 
EVWAGYEILK TLGLRRRGVE LISCPTCGRT EIDLVRIATE VEERLQGTTR ALKVAVMGCV 
VNGPGEAREA DVGIAGGKGV GLLFRKGEPV RTVPESKLVD ALLEEIEKL