| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0498 |
|---|
| Symbol | |
|---|
| ID | 6027534 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | + |
|---|
| Start bp | 537375 |
|---|
| End bp | 538547 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 641593339 |
|---|
| Product | phage integrase family protein |
|---|
| Protein accession | YP_001716676 |
|---|
| Protein GI | 169830694 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG4974] Site-specific recombinase XerD |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.000218969 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTCG AGGAAGCAAT TGAGGCTTAC TTTGAGGTCG GGGTGGTCTT GCGGGGCATG
GCGGCCGGGA CGGTCGAAGC CTACCGGTGC GATTTCCGTG ATTTCTCCCG TTTTCTGGAA
TCTCAGGGAG TGGGGGAGGT ACGGGAAATC ACCACTGCCG TTGTCAACAC CTATCTTGTT
GGGTTGCGGA AGCGCGGCCT CAGTCTGAGC ACCGTTCATC GCCGAAAGAA CGCCCTGAGT
TCGCTTTTGG GTTTCTGTGT CCAGCAGGGC TGGGTGGATA ATAACCCACT TAGAAAAGTC
ATACTGCAGA CAAAACCCCG AACCGTAAGA AATGTCGTCC TGAGCGATAT GGCTGTGCGT
ACCTTCCTCC AGAGCGACGT TACCTACAGG TCCGTTGATG GCTTGACTGT CACAGCCATC
AAAATGTTGC TAGTGTTCAC GGGGTTACGC TGCTCGGAGA TTGTAAGTGC GGACTGGGCG
CACGTCAACC TGAACAGCGG GTTGCTCACG GTGTTCAACT CCAAGAACAC CGCCAGGAAG
GGTTTGCCAG AGGGTAAAGA CCGCGACATC CCCTTATGCC AGACTGTCAT CCAGGCGCTG
AATGCCCTCC CTTACAGGCA AGGGCCGCTG CTCCAAACCA GGGGAGGCCT CCGACTCGGC
GTTGATGCGC TCCGGGAGAT TGTCGCCCGG CTGTCTCAGG CTAGCCGTCT TGAATACGAC
CATAGACCTT TGACGCCCCA TTGCTTCAGA CACAATCTGG CTTCCCAACT GGTTTCCCGG
GGCTACTCCG AGGCAGATGT GGCTACGCTC CTGGGGCATA AACCCGGAAC AGTGACGCAG
GCATACATCC ACTCGACAAT CGAGAGGCTG CGTGAAGCGG TGCAGGGGTA TGACGACGCG
ATAACAGCGA AAGGGGGCAC CGAAGACCGC GCCGTACTCA CCTCACCGGG TACCGGCCAT
CCGCCGAGCA CCTTTGTGAG ACATATGAAT GTCTACGATG ACGCGATGCG CTACTGGAGC
GTGGTGGCCG GCGGACCGGT CGATGACCTG TTTCTGTTGG GGTTCATTTT AGGTCGCAGG
TCGGCCGCCT CTACAGGGAG ACTGTGCTTC CAAGAAGTTT GTACTAATCC AGCTGAGGAT
CCTCACATGA TGAGGATGCT CCAAGTCAAG TAA
|
|---|
| Protein sequence | MTFEEAIEAY FEVGVVLRGM AAGTVEAYRC DFRDFSRFLE SQGVGEVREI TTAVVNTYLV
GLRKRGLSLS TVHRRKNALS SLLGFCVQQG WVDNNPLRKV ILQTKPRTVR NVVLSDMAVR
TFLQSDVTYR SVDGLTVTAI KMLLVFTGLR CSEIVSADWA HVNLNSGLLT VFNSKNTARK
GLPEGKDRDI PLCQTVIQAL NALPYRQGPL LQTRGGLRLG VDALREIVAR LSQASRLEYD
HRPLTPHCFR HNLASQLVSR GYSEADVATL LGHKPGTVTQ AYIHSTIERL REAVQGYDDA
ITAKGGTEDR AVLTSPGTGH PPSTFVRHMN VYDDAMRYWS VVAGGPVDDL FLLGFILGRR
SAASTGRLCF QEVCTNPAED PHMMRMLQVK
|
|---|
| |