Gene Daud_0488 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_0488 
Symbol 
ID6026342 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand+ 
Start bp527560 
End bp528147 
Gene Length588 bp 
Protein Length195 aa 
Translation table11 
GC content67% 
IMG OID641593328 
Product2'-5' RNA ligase 
Protein accessionYP_001716666 
Protein GI169830684 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG1514] 2'-5' RNA ligase 
TIGRFAM ID[TIGR02258] 2'-5' RNA ligase 


Plasmid Coverage information

Num covering plasmid clones30 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGTGAGC TGCGCCTGTT CTGGGCCGTT AATCTGCCCG GCGGCTTAAA AGCCGAGTTG 
GGCCGGCTTC AGGCCGAACT GCAAAATTTG CCCGTCGACT TGAAATGGGT GGAGCAGGAA 
AACCTGCACC TGACGGTGAA ATTTCTAGGT GAAGTTGACA GTTCCAGGGT GTCGGCCCTG 
ACCCGGGCGG TTTCCGGTAG CGTATCCGGT CTGGTGCCGT TTTCGCTGGA ATTGACGGGG 
TGGGGCACTT TCGGCCGCCC GCCGCGCGTG CTCTGGATCG GCGTGGGCGG CGCGGTGGAG 
AAGCTCCAGG AATTGTGGGT CCGGGTGGAC CGGGCTCTTG CCCCGCTCGG CTTCCCGGCG 
GAGAAGTCCT TCTCGCCGCA CCTGACCCTG GGGCGCCTGC GGTCCGCCCG GAACGTGGCC 
GCCCTGCGGG AGCGCGCCGG GGCCCTCGCG GCCGACCGCG GTTCCTGGGG CGGGTTTACG 
GTCGACCGGG TGGACCTGAT GCAGAGCACC CTGACGCGTC AAGGTCCGGT ATACCGGGTA 
GTCTCGACGG CCGCCTTGAG CGGCGGCTCC GGGCGAAAAA CCGACTAG
 
Protein sequence
MSELRLFWAV NLPGGLKAEL GRLQAELQNL PVDLKWVEQE NLHLTVKFLG EVDSSRVSAL 
TRAVSGSVSG LVPFSLELTG WGTFGRPPRV LWIGVGGAVE KLQELWVRVD RALAPLGFPA 
EKSFSPHLTL GRLRSARNVA ALRERAGALA ADRGSWGGFT VDRVDLMQST LTRQGPVYRV 
VSTAALSGGS GRKTD