| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0321 |
|---|
| Symbol | |
|---|
| ID | 6026410 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | + |
|---|
| Start bp | 345973 |
|---|
| End bp | 347361 |
|---|
| Gene Length | 1389 bp |
|---|
| Protein Length | 462 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 641593174 |
|---|
| Product | integrase catalytic subunit |
|---|
| Protein accession | YP_001716513 |
|---|
| Protein GI | 169830531 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR01586] cysteine protease domain, YopT-type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.862943 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | GTGATATTGT CACCTCATAA GCGGTCTGAG AAAATGTCAC CCATGAAGGG AGACGTTTTC
TTGAAACCCA AGGAAGCCAG GAGACTAGGT ATTATGGAAC GGGTCCTTGC AGGCAAGGTA
TCCATTCGGC AGGCTGCCAT CCTCCTTGGT CTCAGCGAAC GTCAGGTTAT GCGCCTCAAG
AAAGGAATGA AACAGGAGGG TGAGGCTTTC CTCGTCCACA AAAACCGAGG CCGTAAACCA
AAACACGCTA TAACCCACGA CGTCCGGGAC CGGATCATCA GCCTCGCCTC AGAAGAACTC
AAGGACGCAA GTTGCGAGCA TATGGCTGAG CTGCTTGAGG AACTATATGA AATTTCGATC
TCGGGCCGCA GCTTGCGTCG CATATTCAAG CAGGCCGGTA TCAAGAATCG GCACAGCCGC
CGAGCCAAGC GGCGGAAACG GCGCTCCCGC GAGCGCATGC CTCAAGAAGG GCTTTTGGTC
CAAAGCGACG CCAGCCCGTA CGCCTGGTTT GAAGATCGTG GCCCCAAGGC CTGCCTCCAC
GGTAATATTG ATGACGCCAC CGGTAAGATC CTGGCACTTT GGTTCCGGCC CGAAGAGGAT
CTGTACGGTT ACTTGATGGT CTTAAACCTA ACGGTCATAA ATCACGGAAT CCCGGTGAGC
CTCTATACGG ACGGCCACTC CATCTTCTTC TCACCGAAGA AGGACAAGTT GTCCATTGAT
GAGGAGCTGG CCGGCAAAAC CGTTGCCCTG ACCCAGTTCG GTAAGGCCCT GGAGGAATTG
GGAATCAATC ATATTCAGGC ACGCTCTCCC CAAGCCAAAG GGCGTATAGA ACGTTTGTGG
GAAACCCTGC AGAGCCGTCT GGTGATAGAG ATGCGCCTGC GAGGGATCTC CAACATTGAA
GACGCGAACG CCTTTCTCCC GGTCTTTATT GAGCGCTTCA ACGCCCGCTT CGCCGTTTGG
GCCGCCGATC CGGAACCGGC CTTTAAACCC GCACCCACCA GTGAACGGCT CAACGAGATT
ATTGCCTTTC GGGAAGAGCG TACGGCTTCC AATGGTTCCA CGATCTCGTT TCACTGTAAG
ACTTACCAGC TTATCGATGT CAAAGATCAA GCAGTTAGCC TGGCGCCCAG GGCGAAGGTT
ACGGTCCTTA CTCATCTGGA CGGGACGATA AGCGCCAAGT ATGGCGATAA GGTGTTTTCG
CTAAGGGAGT TCGTTCCCCA GCCGGCACCT AAGGCGGAGA TCCGTCAAGC CAAGCCCCGC
CGGGAACCTG CTCCGGTGAC TGCGGATCAT CCCTGGCGCC AGATTTCTCC CATAGCGCCC
AAGCCTTCAA CACCAGTGGA AGCGTACCTG GAAGCCAAGA GAAAGCGCTT CCGCAAGTAC
GCCTTTTAA
|
|---|
| Protein sequence | MILSPHKRSE KMSPMKGDVF LKPKEARRLG IMERVLAGKV SIRQAAILLG LSERQVMRLK
KGMKQEGEAF LVHKNRGRKP KHAITHDVRD RIISLASEEL KDASCEHMAE LLEELYEISI
SGRSLRRIFK QAGIKNRHSR RAKRRKRRSR ERMPQEGLLV QSDASPYAWF EDRGPKACLH
GNIDDATGKI LALWFRPEED LYGYLMVLNL TVINHGIPVS LYTDGHSIFF SPKKDKLSID
EELAGKTVAL TQFGKALEEL GINHIQARSP QAKGRIERLW ETLQSRLVIE MRLRGISNIE
DANAFLPVFI ERFNARFAVW AADPEPAFKP APTSERLNEI IAFREERTAS NGSTISFHCK
TYQLIDVKDQ AVSLAPRAKV TVLTHLDGTI SAKYGDKVFS LREFVPQPAP KAEIRQAKPR
REPAPVTADH PWRQISPIAP KPSTPVEAYL EAKRKRFRKY AF
|
|---|
| |