Gene Daud_0293 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_0293 
Symbol 
ID6027080 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand
Start bp314562 
End bp316586 
Gene Length2025 bp 
Protein Length674 aa 
Translation table11 
GC content65% 
IMG OID641593147 
Productexcinuclease ABC subunit B 
Protein accessionYP_001716486 
Protein GI169830504 
COG category[L] Replication, recombination and repair 
COG ID[COG0556] Helicase subunit of the DNA excision repair complex 
TIGRFAM ID[TIGR00631] excinuclease ABC, B subunit 


Plasmid Coverage information

Num covering plasmid clones24 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGCCCCCTT TTAAACTCGT ATCCGACTAT GTGCCCCGGG GCGACCAGCC CCAGGCGATC 
GAAAACCTGG TCCGCGGCCT AGAAAGGGGC CTGCGGCACC AGGTGCTGCT GGGGGTGACC
GGCTCCGGAA AGACCTATAC CATGGCCCAG GTGATCAGCA GGGTTCAGCG GCCGACCCTA
GTGATTGCGC CGAACAAGAC TTTGGCCGCG CAGCTTTGCG CGGAGTTCAA GGAGTTTTTC
CCCGAGAACG CGGTGGAGTA CTTCGTGAGT TACTACGACT ACTACCAGCC GGAGGCCTAC
CTCCCGTCCT CGGACATGTA TATCGAGAAG GACGCCTCGA TCAACGAGGA GATCGACAAG
CTCCGCCACT CGGCGACTTC GTCCCTGTTC GAGCGGCGGG ACGTGATCAT CGTGGCCTCG
GTGTCCTGCA TCTACGGCCT GGGCGACCCG GAGGAATACC GGAACCTGGT CGTTTCCCTG
CGCCGGAACG GCGGCTACGA CCGGGACGCG GTGCTCCGGA AGCTGGTAAG CATCCAGTAC
GAACGGAACG ACATCAATTT CGGGCGCGGC CGGTTCCGGG TGCGTGGCGA CGTGCTGGAG
GTCTTTCCGG CCGCCTCCGG GGAGCGGGCG CTCCGGATCG AGTTCTTCGG TGACGAGGTG
GAGCGGATCC TGGAATTCGA CGCCCTGACC GGGGAAGTGC TGGGGGAACG GCAGCACGTC
TCCATCCTGC CGGCCAGCCA CTACGCCACC TCCAAGGACC GGCTGGACAG GGCGGTCACG
GCCATCGAAA CGGAACTGAC CGAGCGCCTG GCCGAACTCC GGGCGGCGAA CAAGCTTCTG
GAGGCCCAGC GCCTGGAGCA GCGCACGAAC TACGACCTGG AAATGTTGCG GGAACTGGGT
TACTGCAAGG GCATCGAGAA CTACTCCCGC CACCTGACCG GGCGGGAACC GGGAGCGCCG
CCCTTTACCC TGCTCGACTA CTTCCCTGAC GACCTGCTGA TCATAGTGGA CGAGTCGCAC
ATCACCATCC CCCAGATCGG AGGTATGTAC GAGGGCGACC GCTCACGCAA GGTGGCCTTG
GTGGAACACG GTTTTAGGCT GCCGTCGGCC TTCGACAACC GGCCCCTGAC CTTCTCGGAG
TTCATGGCCC GGGTCCGGCA GGGGGTGTAT GTTTCGGCTA CTCCCGGCCC ATGGGAACTG
AAACACAGCG CGGCGGTAGT GGAACAGATC GTGCGCCCGA CGGGGCTGGT GGACCCGGAG
ATGGTGGTCC GGCCCACCCG GGGCCAGATC GACGACCTCT TGGGCGAGAT CCGGCAACGG
GTGGCGAGAA ACGAGCGGGT GCTGGTCACC ACCCTGACCA AACGGATGGC CGAGGACCTA
TGCGACTACT TCCGGGAACT GGGCCTGAAG GTCCGGTACC TGCACTCGGA GATCAACACC
CTGGAGCGGA TGGAGATCCT GCGCGACCTG CGCCTGGGGA CCTTTGACGT CCTGGTGGGG
ATCAACCTGC TGCGGGAGGG GCTGGACCTG CCCGAGGTGA GCCTGGTGGC TGTTCTGGAC
GCCGACAAGG AGGGGTACCT CCGGTCCGAG CGGTCCCTGA TCCAGACGGC GGGGCGGGCG
GCCCGGAACC TGAACGGGAA AGTGATCCTG TACGCCGACC AGATCACCGG ATCCATGCGG
CGCGCGCTGG ACGAGACCGA ACGGCGCCGT GAGCGTCAGA TGGCCTTCAA CCGGGCGCAC
GGCATTACCC CGCAGACCGT GCAGAAGGCG GTGCGGAGCG TGATCGAGGC CACCCGGGCG
GCCGAAACCC AAGCGCCCTA CTACGCGGTG AGCGAGAAAC GGCTGACCAG AAGCGAACTG
AAGAAACTGA TCGCCAGGCT GGAGAAGGAC ATGCGGTACG CGGCCCGGCA TCTCGAGTTC
GAGCGGGCGG CCCAGCTGCG CGACGCCCTG ATTGAACTCC GGCTGCAGCT TCAGCCCAAA
GGCGTCCGCT CGCTCCGCCC GGCGGTCGGC GACGAACCGG AGTAG
 
Protein sequence
MPPFKLVSDY VPRGDQPQAI ENLVRGLERG LRHQVLLGVT GSGKTYTMAQ VISRVQRPTL 
VIAPNKTLAA QLCAEFKEFF PENAVEYFVS YYDYYQPEAY LPSSDMYIEK DASINEEIDK
LRHSATSSLF ERRDVIIVAS VSCIYGLGDP EEYRNLVVSL RRNGGYDRDA VLRKLVSIQY
ERNDINFGRG RFRVRGDVLE VFPAASGERA LRIEFFGDEV ERILEFDALT GEVLGERQHV
SILPASHYAT SKDRLDRAVT AIETELTERL AELRAANKLL EAQRLEQRTN YDLEMLRELG
YCKGIENYSR HLTGREPGAP PFTLLDYFPD DLLIIVDESH ITIPQIGGMY EGDRSRKVAL
VEHGFRLPSA FDNRPLTFSE FMARVRQGVY VSATPGPWEL KHSAAVVEQI VRPTGLVDPE
MVVRPTRGQI DDLLGEIRQR VARNERVLVT TLTKRMAEDL CDYFRELGLK VRYLHSEINT
LERMEILRDL RLGTFDVLVG INLLREGLDL PEVSLVAVLD ADKEGYLRSE RSLIQTAGRA
ARNLNGKVIL YADQITGSMR RALDETERRR ERQMAFNRAH GITPQTVQKA VRSVIEATRA
AETQAPYYAV SEKRLTRSEL KKLIARLEKD MRYAARHLEF ERAAQLRDAL IELRLQLQPK
GVRSLRPAVG DEPE