Gene Daud_0253 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagDaud_0253 
Symbol 
ID6026831 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCandidatus Desulforudis audaxviator MP104C 
KingdomBacteria 
Replicon accessionNC_010424 
Strand
Start bp270880 
End bp271827 
Gene Length948 bp 
Protein Length315 aa 
Translation table11 
GC content58% 
IMG OID641593107 
ProductDNA-directed RNA polymerase, alpha subunit 
Protein accessionYP_001716446 
Protein GI169830464 
COG category[K] Transcription 
COG ID[COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit 
TIGRFAM ID[TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000117405 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTAGAAA TAGAAAAACC GAAGATCGAG TGCGTTGAGA TGGATCCGGA GGGCACGTAC 
GGGAAGTTCG TCGTCGACCC TCTGGAAAGG GGCTACGGTA TTACGCTGGG TAATTCGCTC
CGGCGCGTGC TTTTAGCCTC GCTGCCCGGG GCGGCGGTCA CCGCCGTCAA GATCGACGGG
GTGCTGCACG AGTTTTCAAG TATTCCCGGC GTGCGTGAAG ACGTCACCGA GCTGATCCTA
AACCTGAAAA GCCTGCGTCT GAAGCTCTAC GGCGAAGAGG ATCGGTTGAT GCGGATCGAG
GCGGAAGGCG AGGGCCGGAT CACCGCCGGC GACATCATCA CCAGTCCGGA TGTGGAGATC
CTGAATCCGG ACCTGCATAT CGCCACGCTG GAGCCCGACG CACGATTGTA TATGGAATTG
ACGGTGGGCC GGGGACGGGG TTACGTTCCG GCGGAGAAAA ACAAGCGCGG CAACCACGTG
ATCGGCGTGA TTCCCGTCGA CTCCATCTTT ACGCCGGTGA CCAAGGTGAA CTTTACGGTG
GACAAAACGC GGGTGGGCCA CGACACCGAC TTTGACAAAC TAACTATGGA GGTCTGGACC
GACGGCAGCC TGCGCCCGGA CGAGGCGTTG AGCTTGGCCG CGCGGATCAC CACGGAACAC
CTGCGGCTGT TCGTGGGTCT CACCGAATCG GTGAACAACG TCGAGATCAT GGTGACGAAA
GAAGAAGAGA AAAAGAACAA GCTTTTGGAA ATGCCCATCG AAGAACTCGA TCTTTCCGTA
CGTTCGTACA ACTGTCTGAA ACGGGCCGGG ATCAACACGG TGGAAGAACT CATCCAGCGC
AACGAGGAAG AAATGATGAA GGTGCGCAAC CTGGGCAAGA AGTCGCTGGA GGAAGTAGTG
CGCAAGCTGG GTGAACTCGG CCTCGACCTG CGGCATGACG AGGAATAG
 
Protein sequence
MLEIEKPKIE CVEMDPEGTY GKFVVDPLER GYGITLGNSL RRVLLASLPG AAVTAVKIDG 
VLHEFSSIPG VREDVTELIL NLKSLRLKLY GEEDRLMRIE AEGEGRITAG DIITSPDVEI
LNPDLHIATL EPDARLYMEL TVGRGRGYVP AEKNKRGNHV IGVIPVDSIF TPVTKVNFTV
DKTRVGHDTD FDKLTMEVWT DGSLRPDEAL SLAARITTEH LRLFVGLTES VNNVEIMVTK
EEEKKNKLLE MPIEELDLSV RSYNCLKRAG INTVEELIQR NEEEMMKVRN LGKKSLEEVV
RKLGELGLDL RHDEE