| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Daud_0192 |
|---|
| Symbol | |
|---|
| ID | 6025511 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Candidatus Desulforudis audaxviator MP104C |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010424 |
|---|
| Strand | + |
|---|
| Start bp | 219240 |
|---|
| End bp | 219890 |
|---|
| Gene Length | 651 bp |
|---|
| Protein Length | 216 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 641593045 |
|---|
| Product | RNA polymerase factor sigma-70 |
|---|
| Protein accession | YP_001716388 |
|---|
| Protein GI | 169830406 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02859] RNA polymerase sigma-H factor
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.00000106571 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGAGCCTCA ACCCCCAATT CGAGACTGCC CAGTTCCAGA TCTATCACGC CCTAGAAGAC
GAGAAGATAG TTGAACATGC CCGGGAAGGC GACAGTGAAG CCCTGGAATT CCTCATCAAC
AAGTACCGCC ATTTTGTGCG CGCCAAGGCC CGGTCCTATT TCCTGATCGG GGCCGACCGG
GAGGACATCA TCCAGGAGGG TATGATTGGC CTTTACAAGG CTATCCGCGA CTTCCGCCTG
GACAAACTCT CCTCGTTCCG GGCGTTTGCC GAACTGTGTA TCACCAGGCA GATCATTACG
GCGATCAAAA CGGCGACCAG GCAAAAACAC ATCCCCCTCA ATTCTTACGT ATCCCTGAAC
AAACCCATCT ACGACGAAGA CTCGGACCGC ACCCTCCTGG ACGTCATCTC CGGTTCCAAA
ATCACCGATC CCGAAGAACT TGTCATCAGC CGCGAAGAGT TTGACGATAT CGAGGAGAAA
ATCGGCGAAC TGCTTAGTTC GTTGGAATGG AAGGTGCTCA TGTCCTACCT GGAGGGCAAG
TCCTACCAAG AGATCGCCGA GGATCTGGAC CGGCACGTAA AATCGATCGA TAACGCCCTG
CAGCGGGTAA AGCGCAAACT GGAGAAATAC CTGGAAAGGC GCGAAATTTA G
|
|---|
| Protein sequence | MSLNPQFETA QFQIYHALED EKIVEHAREG DSEALEFLIN KYRHFVRAKA RSYFLIGADR
EDIIQEGMIG LYKAIRDFRL DKLSSFRAFA ELCITRQIIT AIKTATRQKH IPLNSYVSLN
KPIYDEDSDR TLLDVISGSK ITDPEELVIS REEFDDIEEK IGELLSSLEW KVLMSYLEGK
SYQEIAEDLD RHVKSIDNAL QRVKRKLEKY LERREI
|
|---|
| |