Gene Daud_0087 details

Gene Information

• Locus tag: Daud_0087
• ID: 6027041
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Candidatus Desulforudis audaxviator MP104C
• Kingdom: Bacteria
• Replicon accession: NC_010424
• Strand: +
• Start bp: 89780
• End bp: 91642
• Gene Length: 1863 bp
• Protein Length: 620 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 641592940
• Product: ATP-dependent metalloprotease FtsH
• Protein accession: YP_001716287
• Protein GI: 169830305
• COG category: [O] Posttranslational modification, protein turnover, chaperones
• COG ID: [COG0465] ATP-dependent Zn proteases
• TIGRFAM ID: [TIGR01241] ATP-dependent metalloprotease FtsH

Plasmid Coverage information

• Num covering plasmid clones: 17
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

TTGTTGAACC GGGTTATCAA GAACCTGAGT ATATACATCC TGATTGTTCT GGTGGTTATC 
GCCCTGCTCA AATACAGCTC CCCGGGTCCC ACCGACGTAA AAACCCTTGA CTATAACGAG 
TTTTTCCGGG CCGTGAACAA CGGTCAGGTG GCGTCCGTGG TGATCAAGAC GGACAACGAG 
ACCAACATCA TCACGGGCCG TTTGCGGGAT GGTACCAGTT TTGAAACCAA AGGTCCCGGC 
AGCCACCAGG CTCTGTTGAC GCTGCTCGTT GAAAAGAACG TTAATTGGAA GCAGGAGTTG 
CCGGACCGGC CCAGTTGGCT GACGACCATG TTTATGTCGT TCCTGCCCAT CCTGCTTTTG 
GTCGGGTTGT TCTTCTTCCT CATGCAACAG ACGCAAGGCG GGGGCAGCCG GGTGATGTCG 
TTCGGCAAGA GCCGGGCCAA ACTGCACACG GAGGAGAAAA CCCGGGTTAC TTTTTCCGAT 
GTGGCCGGGG TGGACGAGGT TAAGGAGGAA CTCCAGGAAC TGGTCGAATT CCTCAAGGAA 
CCCCGTAAGT TCAGCGAGAT CGGGGCCCGG ATTCCCAAGG GCGTCCTGCT GTTCGGGCCG 
CCCGGCACCG GCAAGACCCT GTTGGCCCGG GCGGTAGCCG GGGAAGCCGG CGTCCCCTTT 
TACAGCATCA GCGGTTCGGA TTTCGTGGAG ATGTTCGTGG GCGTTGGGGC GTCCCGGGTT 
CGGGACCTGT TTGAGAACGC CAAGAAAAAC GCCCCGTGCA TCGTGTTTAT CGACGAGATC 
GACGCGGTCG GCCGCCAGCG CGGCGCTGGC CTCGGCGGCG GTCACGACGA GCGGGAGCAG 
ACCTTAAACC AGTTGCTGGT GGAGATGGAC GGGTTCAGCC CCACCGAGGG GATCATCGTC 
GTCGCCGCCA CCAACCGTCC GGACATCCTG GACCCCGCCC TGCTGCGGCC CGGACGTTTC 
GACCGGCAGA TCATCGTCAC CCAGCCGGAC ATCAACGGCC GCCGGGAGAT CCTGGCCGTG 
CACGCCCGGA ACAAGCCGCT GGCGGACGAC GTCGAATTGG ACGTGATTGC CCGTCGTACC 
CCGGGTTTTT CCGGGGCCGA TCTGGAAAAC CTGATCAACG AGGCCGCCCT GCTGGCGGCG 
CGGGCAAACA AAAAGCGCAT TGGCATGGAA GAACTCGAAA ATGCTATTGA ACGGGTGATC 
GCCGGGCCGG CCAAGAAGTC CCGGGTGATC AGCGACTACG AAAAGAAGCT CGTGTCCTAC 
CACGAGTCCG GTCACGCGCT GGTCAGCTAC TTCTTGCCGA ACAGCGATCC GGTGCACAAG 
ATCTCGATCA TCCCGCGGGG GCGGGCCGGG GGCTACACTC TCCTCTTGCC CAAGGAGGAG 
CGGTACTACG CGACCCGTTC GCAGCTCCTG GACCAGATCA CGATGCTGCT GGGCGGCCGG 
GTGGCCGAGG AGTTGGTGCT GGAGGAGATC AGCACCGGTG CTCAGAACGA CCTGGAGCGC 
GCCACCGAAA TCGCGCGAAA GATGATTATG GAATATGGGA TGAGCGACGA ACTGGGGCCG 
CTGACTTTGG GCCGGCGGCA GGATACGCCT TTCCTGGGGC GCGACCTAGC CCGCGACCGG 
AACTACTCCG AAGAGGTGGC CAGCGCCATC GACCAAGAGG TACGCCGGAT CATCGACGAG 
TGTTACCGGC GGGCGGAGGC TATCCTGACC GACAATATGC AGGGGCTGCA CCAGGTGGCC 
ACCACGCTGT TCGATAATGA GACCATTGAA GGCAAAGAGT TCGAGGCGTT GATGGAGGCG 
GCCACCGGCG CGGCAAGGCC GGAAGCGGCC CGGCACGGGG TGGCCCAGCA AGGAGGAGCG 
TAA 

 

Protein sequence

MLNRVIKNLS IYILIVLVVI ALLKYSSPGP TDVKTLDYNE FFRAVNNGQV ASVVIKTDNE 
TNIITGRLRD GTSFETKGPG SHQALLTLLV EKNVNWKQEL PDRPSWLTTM FMSFLPILLL 
VGLFFFLMQQ TQGGGSRVMS FGKSRAKLHT EEKTRVTFSD VAGVDEVKEE LQELVEFLKE 
PRKFSEIGAR IPKGVLLFGP PGTGKTLLAR AVAGEAGVPF YSISGSDFVE MFVGVGASRV 
RDLFENAKKN APCIVFIDEI DAVGRQRGAG LGGGHDEREQ TLNQLLVEMD GFSPTEGIIV 
VAATNRPDIL DPALLRPGRF DRQIIVTQPD INGRREILAV HARNKPLADD VELDVIARRT 
PGFSGADLEN LINEAALLAA RANKKRIGME ELENAIERVI AGPAKKSRVI SDYEKKLVSY 
HESGHALVSY FLPNSDPVHK ISIIPRGRAG GYTLLLPKEE RYYATRSQLL DQITMLLGGR 
VAEELVLEEI STGAQNDLER ATEIARKMIM EYGMSDELGP LTLGRRQDTP FLGRDLARDR 
NYSEEVASAI DQEVRRIIDE CYRRAEAILT DNMQGLHQVA TTLFDNETIE GKEFEALMEA 
ATGAARPEAA RHGVAQQGGA