Gene Caul_4889 details

Gene Information

• Locus tag: Caul_4889
• Symbol: rimM
• ID: 5902351
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Caulobacter sp. K31
• Kingdom: Bacteria
• Replicon accession: NC_010338
• Strand: +
• Start bp: 5284919
• End bp: 5285521
• Gene Length: 603 bp
• Protein Length: 200 aa
• Translation table: 11
• GC content: 69%
• IMG OID: 641565409
• Product: 16S rRNA-processing protein RimM
• Protein accession: YP_001686507
• Protein GI: 167648844
• COG category: [J] Translation, ribosomal structure and biogenesis
• COG ID: [COG0806] RimM protein, required for 16S rRNA processing
• TIGRFAM ID: [TIGR02273] 16S rRNA processing protein RimM

Plasmid Coverage information

• Num covering plasmid clones: 45
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 26
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

TTGGGTGAAG GCGCTTTCTC ACCTATGACC CAGTCGTCCC CGCAAAACTT GATCCTCGTC 
GGCCGCGTCG CCGGCGCCTT CGGCGTGCGC GGCGAGCTGA GAATCGCCAC CTATACCGAA 
GATCCCCTGA CCCTGACCCG GTTCAAGGCC CTGACCCGCC AGGACGGCTC GCCGGCCCTG 
ACCGTTCAGA CCGCCAGAGT GGTCAAGGAC GGCGTCGTCG CCCGCTGCGC CGGGGTCGAC 
ACCAAGGAAG CGGCCGACGC CCTGCGCGGC CTGCGCCTCT ACGTCCCGCG CGCGGCCCTG 
CCCGAGCCGG ACGAAGACGA GTACTACCTG GCCGACCTGA TCGGCCTGCC GGTGCGCCAT 
GTCGCCACCG ATGAACTGCT GGGCAAGATC AAGAGCGTCC AGAACTTCGG GGCCGACGAC 
CTGCTGGAAA TCGACCCAGC CCTGGGCGGC CAGACCTGGT ACCTGCCCTT CACCCGCGCC 
GCCGTGCCCG AGGTGAAGAT CGCCGACGGC GTGGTGCTGG CCGATCCGCC GGCGCTGGTG 
GGCGAGCCCG AGGGTCCGGA AAGCCCGGCC GAGGATGATG ACGGCGAGCG TCACTACGAC 
TGA 

 

Protein sequence

MGEGAFSPMT QSSPQNLILV GRVAGAFGVR GELRIATYTE DPLTLTRFKA LTRQDGSPAL 
TVQTARVVKD GVVARCAGVD TKEAADALRG LRLYVPRAAL PEPDEDEYYL ADLIGLPVRH 
VATDELLGKI KSVQNFGADD LLEIDPALGG QTWYLPFTRA AVPEVKIADG VVLADPPALV 
GEPEGPESPA EDDDGERHYD