| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_4852 |
|---|
| Symbol | |
|---|
| ID | 5902314 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010338 |
|---|
| Strand | + |
|---|
| Start bp | 5247270 |
|---|
| End bp | 5250269 |
|---|
| Gene Length | 3000 bp |
|---|
| Protein Length | 999 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 641565372 |
|---|
| Product | double-strand break repair protein AddB |
|---|
| Protein accession | YP_001686470 |
|---|
| Protein GI | 167648807 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG3893] Inactivated superfamily I helicase |
|---|
| TIGRFAM ID | [TIGR02786] double-strand break repair protein AddB, alphaproteobacterial type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.173842 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCACGG CCGGCCCCTT CGACCGCCCC CTCTTCGGTC GTCCGGGGCC GCGCTGGTTC
TCGATCCCCG CCCATCGGCC CTTCGTCGAG GACCTGGCGC GCGGCCTGCT GAGCGCCCTG
GCGCCGCTGG GTCCCGAGGC CCTGCCCGCC GCCACCGTCC TGACCCCGAC CCGGCGCGGG
GCCCGAGCCT TGGCCGACGC CTTCGTGGCG GCCGGCGGCG GCAAGGCCCT GCTGCTACCG
CAGATCCGCC CGCTGGGCGA CCTGGACGAG GGCGAACCGC CGTTCGAGCC GGGCGAGCTG
AGCCTGGACC TGCCGCCCGC CGTCTCCTCG CGCCGCCGCC GGTTCGAACT GGCCCGGCTG
GTCGCAGAAC ACGCCCCTCT GCTGTCGTTC CAGCCTCAGG CGGGGCAGGC GTTGGAGATG
GCCAAGGCCC TGGCCGACTT CCTCGACAGC TGCCAGATCG AGGAGGTGGT CGCCGACGAC
GGCCGCCTGG ACAGCCTGGC CGAAGGCGAC CTGGCCCAGC ACTGGCAGGT CTCGGCGCGG
TTCCTGAAGG CCGTCCTGAC CGCCTGGCCC AAACGGTTGG ACGAACTGGG CCTGATCGAC
GTCAGCGACC GCCGGGTGCG GCTGCTCAAC GCGCTGTCCG ACCAGTGGGA GCAGAACCCG
CCCCAGGGGG TGCTGGTCGC CGCCGGCTCG ACCGGCACGG CCCCGGCCAC CGCGCGCCTG
CTCGGCGTCA TCGCCAACCT GCCCCAGGGC GCGGTGGTGC TGCCCGGCCT CGATGACGGC
CTGGCCGACG ACGCCTGGGA CAAGATCGCC GGCGTCCAGG GCGAACAGCA TCCGCAGGGG
GCGATGAAGC GTCTGTTGGA CGGAGCCGGC GCGACCCGCG CCGACGTCCG CCCCTGGTGG
CCCGAGGCCG ACAGCCGGGG CCGCTGGCGC CGCCGCCTGA TCAACGAGGC CCTGCGCCCG
GCCGAGGCCA CCGCCGACTG GCTGGCCCAG ATCGATCGCC TTCGCGAGGA GGCTCCTGGC
CTCGATCCGA TCGCCGAGGG GTTGAAGGGC CTGTCCCTGG TCAGCACCCG CACCGAGGAG
GAGGCCGCCG TCGCCTGCGC GCTTCTCTTG CGCGAGGCCC TGGAGACCGA GGGCCTGACC
GCCGCCCTGG TCACCCCCGA CCAGGAACTG GCCCGCCGGG TCGGCGCCCG CCTGATGCGC
TGGGGCGTGA TCCCCGACAG CTCGGCCGGC GCGCCCCTGG CCGCCAGCCC CGCCGCCATC
CTGGCCCAGC ATGTCGCCGC CCTGGCGGTC GATCCGCTCG ACCCCGTGCG CCTGCTGGCC
GTGGCCAAGC ATCCCCTGCT GCGCGCCGAC GCCGTGGCCG CCCGCGACCT GGAACTGAAG
AGCTTGCGCG GCCCCGCGCC GCGCGACGCG GGCCAACTGC TGGGCAAGCT GAAGGACCAT
CCCGACGCCC TGGCCCTGGC CGAGCGCGTC CTGGCCGCCG CTCGCCAGGC CGCCGCGCCC
TATGTCGATG ACCAGGCCCC GCCATCCGTC GCCACCCGCG CCCTGGTCGA GAGCCTGGAG
GCCCTGGCCG ATCCCGCCGA CCTGTGGGCC GGGTCGGCCG GCGAATGCCT GGCCGGCCTG
TTGTCGTCGC TAATCACCGA CGGCGTCGTC CTGCCGCCCG CCTCGGCCCT GGGTTTCGCC
GACCTGCTCG ACCGGCTGGT CAACGAAGAG ACCCTGCGCG TCGGCGGCGC CACCCACCCG
CGCCTGCGGA TCTTCGGGGC CATCGAGGCG CGGATGGTGC GGGCCGACCG GTTGATCCTG
GCCGGCCTGG AGGAAGGGAT CTGGCCCAAG AACGCGCCGA TCGACCCGTT CCTGTCGCGG
CCCATGCGCG CCAAGCTGAA CCTGCCGCCG CCCGAGCGCC GCATCGGCCT GACCGCCCAC
GACTTCGCCC AGGCGGCCTG CGCGCCCGAC GTGATCCTGG TCCACAGCGA GCGACGCGGC
GGGGCGCCGG CCGTCGAGAG CCGCTGGCTG TGGCGGCTGA AGACCCTGGC CCGCGGCGCC
GGCCTGCGCC TGACCGAGCG CCCCGACGTC CTGGCCTGGG TCCGCGATCT GGACGCCGCC
GGTCTCTATG ACCCCATCAA GCGCCCCGCG CCGACGCCGC CGGTCGCCGA CCGACCGCGC
AAGATGGCCG TCACCCGGGT CGAGGCCCTG ACCCGCGACC CCTACGCCGT CTGGGCGCGC
GACATCCTCA AGCTCTATCC GCTCGATCGC CCCAACGAGC CGGTCGAGGC CCGGGCGCGC
GGCACGGCGA TCCACGCGGC GTTCGAGACG TTCGCGCTGC AACACCCCGG CCCCGTGCCC
GCCAACGCCG CCGAGATCTT CGCTGGCCTG TACCTGTCCG AACTGGTCGC CGCAGGCATG
CCGCCCGCCG CCCTGGCCCG CGAACGCGCG CTCGCGCGGG AAGCAGCGCT GTGGGTCGCC
GACCTGGAGA CGCGCCGGCG GGCCGGGGCC GAACGGATCG TGGTCGAGGC CGCCGGATCG
CTGACCTTCG ATATCGGCGG CCGCCCGTTC ACCGTCACCG CCAAGGCCGA CCGCATCGAG
CCCACCGCCG ACGGGATGGC CCACATCCTC GACTACAAGA CCGGCGCCGC GCCGTCCAAG
AAGCAGGTCG AGACCGGCTT CTCGCCCCAG CTGACCCTGA CCGCCGCCAT TCTGCGCGAG
GGCGGCTTCC CCGACATCGG CCCGCGCGAG CCCGGCGACC TGACCTATCT GCGGGTCACG
GGCCGCAAGC CGGCCGGGGT GGAAGAGGTG CGGGCCGCCG CCGGAGCCGA CGCCCAGGAG
GCGGCGATCA AGGCGCTGAA CGGGCTGCGC GAGCTGATCG AGCGCTACGA CGATCCGAAA
CAACCCTATC TCTCCCGCGT AGCTCCACAG TTCGTGCATG ACCATGTGGG AGACTACGGA
CATCTGGCGC GGGTGTTCGA GTGGTCGACC AGCGGCGATG ACGGGGAGGG CGGCGAATGA
|
|---|
| Protein sequence | MTTAGPFDRP LFGRPGPRWF SIPAHRPFVE DLARGLLSAL APLGPEALPA ATVLTPTRRG
ARALADAFVA AGGGKALLLP QIRPLGDLDE GEPPFEPGEL SLDLPPAVSS RRRRFELARL
VAEHAPLLSF QPQAGQALEM AKALADFLDS CQIEEVVADD GRLDSLAEGD LAQHWQVSAR
FLKAVLTAWP KRLDELGLID VSDRRVRLLN ALSDQWEQNP PQGVLVAAGS TGTAPATARL
LGVIANLPQG AVVLPGLDDG LADDAWDKIA GVQGEQHPQG AMKRLLDGAG ATRADVRPWW
PEADSRGRWR RRLINEALRP AEATADWLAQ IDRLREEAPG LDPIAEGLKG LSLVSTRTEE
EAAVACALLL REALETEGLT AALVTPDQEL ARRVGARLMR WGVIPDSSAG APLAASPAAI
LAQHVAALAV DPLDPVRLLA VAKHPLLRAD AVAARDLELK SLRGPAPRDA GQLLGKLKDH
PDALALAERV LAAARQAAAP YVDDQAPPSV ATRALVESLE ALADPADLWA GSAGECLAGL
LSSLITDGVV LPPASALGFA DLLDRLVNEE TLRVGGATHP RLRIFGAIEA RMVRADRLIL
AGLEEGIWPK NAPIDPFLSR PMRAKLNLPP PERRIGLTAH DFAQAACAPD VILVHSERRG
GAPAVESRWL WRLKTLARGA GLRLTERPDV LAWVRDLDAA GLYDPIKRPA PTPPVADRPR
KMAVTRVEAL TRDPYAVWAR DILKLYPLDR PNEPVEARAR GTAIHAAFET FALQHPGPVP
ANAAEIFAGL YLSELVAAGM PPAALARERA LAREAALWVA DLETRRRAGA ERIVVEAAGS
LTFDIGGRPF TVTAKADRIE PTADGMAHIL DYKTGAAPSK KQVETGFSPQ LTLTAAILRE
GGFPDIGPRE PGDLTYLRVT GRKPAGVEEV RAAAGADAQE AAIKALNGLR ELIERYDDPK
QPYLSRVAPQ FVHDHVGDYG HLARVFEWST SGDDGEGGE
|
|---|
| |