| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_4813 |
|---|
| Symbol | |
|---|
| ID | 5902275 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010338 |
|---|
| Strand | - |
|---|
| Start bp | 5208026 |
|---|
| End bp | 5209396 |
|---|
| Gene Length | 1371 bp |
|---|
| Protein Length | 456 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641565333 |
|---|
| Product | HlyD family type I secretion membrane fusion protein |
|---|
| Protein accession | YP_001686431 |
|---|
| Protein GI | 167648768 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.474577 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGA CCGAACAAAC CGTCCGGGCC GGCCTGCCGG CCCGTTGGGA CCAGGACGAG
GTCACCAGCG ACAATCCCGG TCACGAGATC AAGGCCGGGG CGCTGATCGC GCTGGCGTTC
TTTGGTGTCT TCCTCGGCTG GTCGTTCATC GCGCACCTGG ACGCCGCCGC GGTCGCCCAA
GGGTCGATCT CGGTCGCCGG CCACCGGCAG ACCGTGCAGC ACAAGGACGG CGGCATCGTT
TCGGCGATCT ACGTCAAGGA AGGCCAGCAT GTGAAGGCGG GCCAAGTGCT GATCGATCTG
GCTCCCGCCG ACGTCGAGGC GCTGGAACGG TCGATGGCCG CCCAGGTCAT CGGCCTGCAA
GCCCAGCGCG CCCGTCTCTA TGCGGAGCGT CTCGGTCTTT CGTCGATGGA GGCGCCGGCC
GAGTTCGCCA GCCTGACCGG CTACGACAAG GAGGAAGCCG ATCGCGCCCT GAAGATGCAG
CAGATCGAGC TGATGGCCGG CCGCCGCGCG GTGGGTGGAC AGAAGGCCGT TCTGGCCCAG
CGCTCGGCGC AGATCTCGCG CCAGATCGAA GGCTTCACCC AGCAGGCGCG CTCGACCGAC
GACCAGTCGC GGTTGATCAA CGACGAACTG CAGGGCACTC GCGACCTGGC CGGCAAGGGC
TATGCCTCGG TCAATCGGGT CCGCGCCCTG GAACGCACGG CCGCCGGCCT GGCTGGCTCG
CGCGCCGAAC TCGACGCCAA CGCCGCCCGG GCTCGCGAGC AGATCGGCGA AACCCGCATG
CAGGCCGCCA GCCTCGACAG CGACCGGGCC GAGCAAGTGG CCAAGGAAAT GCGCGACGTC
GAATTCCAGC TGAACGACCT GCTGCCCAAG CTGCGCGCGC TCAAGGAACA GCTGGCGGGA
ACCTCGATAC GCGCGCCGGC CACCGGCCAG GTGGTGGGCC TGACGATCTT CACGGTCGGC
GGCGTCATCG CGCCCGGCCA GCACCTGCTG GACATTGTGC CGGACATGGC TCCGCTGGTC
ATTGAGGCCC AGGTCAACCC GTCCGACGCC GGCGACCTCT ATGTCGGCCA GGAGACCGAG
GTGAAGATCG CCTCGCTGCA CGACCGTCAA ATCCCGATCC TCAAGGGCGA ACTGACGCGG
GTTTCGGCCG ACAGCTTCAC CGACGAGAAG AGCGGCGCGC GATACTTCAC CGCCGAGGTG
ACCGTGCCCG TCAGCCAGCT CCAGACCCTG AGCACCAAGA CCGGGGCCGT CTACAAGCTG
AAGCCGGGCC TGCCGGTGCA GATCATGGTG CCGCTGCGCA AGCGCACGGC GTTCCAGTAT
CTGACCGAAC CGCTGACCTC GGCCCTCTGG CGGTCGTTCC GCGAGCACTA G
|
|---|
| Protein sequence | MNLTEQTVRA GLPARWDQDE VTSDNPGHEI KAGALIALAF FGVFLGWSFI AHLDAAAVAQ
GSISVAGHRQ TVQHKDGGIV SAIYVKEGQH VKAGQVLIDL APADVEALER SMAAQVIGLQ
AQRARLYAER LGLSSMEAPA EFASLTGYDK EEADRALKMQ QIELMAGRRA VGGQKAVLAQ
RSAQISRQIE GFTQQARSTD DQSRLINDEL QGTRDLAGKG YASVNRVRAL ERTAAGLAGS
RAELDANAAR AREQIGETRM QAASLDSDRA EQVAKEMRDV EFQLNDLLPK LRALKEQLAG
TSIRAPATGQ VVGLTIFTVG GVIAPGQHLL DIVPDMAPLV IEAQVNPSDA GDLYVGQETE
VKIASLHDRQ IPILKGELTR VSADSFTDEK SGARYFTAEV TVPVSQLQTL STKTGAVYKL
KPGLPVQIMV PLRKRTAFQY LTEPLTSALW RSFREH
|
|---|
| |