Gene Caul_3948 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaul_3948 
Symbol 
ID5901410 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaulobacter sp. K31 
KingdomBacteria 
Replicon accessionNC_010338 
Strand
Start bp4274546 
End bp4275679 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content68% 
IMG OID641564469 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_001685571 
Protein GI167647908 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.0770122 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAGCGCTG AGACCAACCA ACCCATCATC ACCTTCGAGA ACGTCACCAA GCGCTTCGGC 
AAGATGGTGG CCGTCGACAA CGTGTCCCTC AGCATTCAGG AGGGCGAGTT CTTCTCGCTG
CTGGGGCCGT CGGGTTGCGG CAAGACCACG CTGCTGCGGA TGCTGGCTGG GTTCGAAACG
CCGACCGAGG GGCGCATCCT GATCGACGGC CAGGACATCT CCAACACCCC GCCCAACAAG
CGGCCCGTGA ACATGGTGTT CCAGTCCTAC GCCGTGTTCC CGCACATGAG CGTGCACGAC
AACGTCGCCT ACGGCCTGAA GGTCGACCGG GTGGGCAAGA CCGAGCGGGA GCGGCGGGTG
GAGGAGGCGC TGGACCTGGT CCAACTGCAC GGCCTGGCCG AGCGCAAGCC CGACCAGCTG
TCGGGCGGCC AGCGCCAGCG CGTGGCCCTG GCCCGGGCGC TGGTCAAGCG CCCGCGCGTG
CTGCTGCTGG ACGAGCCGCT GTCGGCCCTG GACGCCAAGC TGCGCGACCA AATGCGCACC
GAGCTGTGCA CCCTGCAGGA GAAGGTCGGC ATCACCTTCA TCATGGTCAC CCACGACCAG
GACGAGGCCC TGGCCCTGGC CTCGCGCTGC GCGGTGATGA ACCGCGGCCT GCTGCAGCAG
GTGGCCGGCC CCAGCGACCT CTACGAGTTC CCCAACAGCC GCTTCGTGGC CGACTTCATC
GGCAGCGTGA ACCTGTTCGA GGGCGTGCTG GCGGTCGACG AGCCGAGCCA CGCGGTGGTG
AAATCGCCCG AGATCGACTG CGACATCTTT CTCGACCACG GCGTCACCGG CGCGCGCGGC
GGCACGGTCT GGGCGGCGCT GCGGCCCGAG AAGATCGAGC TGCACAAGCG TCCCGACGGC
GCCCCGCCGC CGAACATGGG CGACTGCCCG ATCGGCCAGA ACGCCGTGGC CGGGGTGATC
AAGCACGAGG CCTATCTGGG CGGTCAGAGC CTCTATGAGG TCGAGATCGC TTCGGGTCGG
CGGATCAAGG TCGCGCGCCA GAACCTGACC CGCTGGGACC AGGAAGACTT CAAGCTGGGC
GAGGCGGTGT GGCTGGGCTG GCACGCCTGT TCGCCGGCGG TGTTGTTGTC GTGA
 
Protein sequence
MSAETNQPII TFENVTKRFG KMVAVDNVSL SIQEGEFFSL LGPSGCGKTT LLRMLAGFET 
PTEGRILIDG QDISNTPPNK RPVNMVFQSY AVFPHMSVHD NVAYGLKVDR VGKTERERRV
EEALDLVQLH GLAERKPDQL SGGQRQRVAL ARALVKRPRV LLLDEPLSAL DAKLRDQMRT
ELCTLQEKVG ITFIMVTHDQ DEALALASRC AVMNRGLLQQ VAGPSDLYEF PNSRFVADFI
GSVNLFEGVL AVDEPSHAVV KSPEIDCDIF LDHGVTGARG GTVWAALRPE KIELHKRPDG
APPPNMGDCP IGQNAVAGVI KHEAYLGGQS LYEVEIASGR RIKVARQNLT RWDQEDFKLG
EAVWLGWHAC SPAVLLS