| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_3744 |
|---|
| Symbol | |
|---|
| ID | 5901206 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010338 |
|---|
| Strand | + |
|---|
| Start bp | 4059489 |
|---|
| End bp | 4061153 |
|---|
| Gene Length | 1665 bp |
|---|
| Protein Length | 554 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641564267 |
|---|
| Product | choline dehydrogenase |
|---|
| Protein accession | YP_001685369 |
|---|
| Protein GI | 167647706 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0339169 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAGCA CGCGCTACGA TTACGTCATC ATCGGCGCCG GCTCGGCCGG CTGCGTCCTG
GCGGCTCGGC TGACCGAGGA CGCCAACGTC AAGGTCCTGC TGCTGGAGGC CGGCGGCAAG
AACACCTCGA TCCTGGTCAA GATGCCCGCC GGGGTGGGCG AGTTGATCAA GGCCAAGGGC
GATCAGAACT GGGGCTTCTG GACCGAGGCC GAGCCGCACC TGAATGACCG CAAGCTGTGG
TGGCCGCGCG GCAAGGGCCT GGGCGGCAGC TCGGCCATCA ACGGCATGAT CTACATCCGC
GGCCACGCCC GCGACTATGA CCAGTGGCGG CAGATGGGGC TGTCGGGCTG GTCCTATGCC
GAGGTGCTGC CCTACTTCAA GCGTTCGGAG ACCCACCATG GCGGCGGCGA CGCCTATCAC
GGCGGGGCCG GACCGCTGCA CGTGTCGGGC GGCGAGAGCA AGAGCCCGTT CTACCCCGCC
CTGATCGAGG CCGGCCGCCA GGCGGGCCAT GCGACCACGA AGGATTTCAA CGGCTTCCGG
CAGGAAGGCT TTGGCCCCTA CGATCTGACG ATCCGCGACG GCAAGCGCTG GAGCGCGGCG
GCGGCCTATC TGACGGCGGC CCTGGCCCGT CCGAACCTGA CCTGCGTGAC CGAGGCCCGC
ACCACGCGGA TCCTGATCGA GAACGGCAAG GCGATCGGCG TGGAATATGT GGTCGGGACC
GATCCGGCGC GGCTGGTCGC CCATGCCGAC GCCGAGGTGC TGCTCAGCGC CGGCGCCGTG
CAGTCGCCGC ATATCCTGCA GCTGTCGGGC GTCGGCGATC CGGACGACCT GAAGGCCCAC
GGCATCGCCC CCGTGCACGA GGCCAAGGGC GTCGGCGCCA ACCTGCAGGA TCACCTGGAC
GTCTGCCTGT CGTGGACCAG CAAGAACCTG GTCACCGCCT ATTCGGCCAA CAAGGGCCTC
AAGAAGCTGG GCACGGGCCT GTCCTACATG CTGCTGGGCA AGGGCCTGGG TCGTCAGCAG
TTCCTGGAGA GCGGAGCCTT CCTGAAGTCG CGCCCCGATC TGGACCGCCC CGACCTGCAG
ATCCACGGCG TGCTGGCGAT CATGCAGGAC CACGGCAAGA CGATGATCGA GAAGGACGGC
TTCACCCTGC ACGTCTGCCA GCTTCGTCCC GAGAGTCGCG GAAAGGTCGG GTTGCGCTCG
GCCGACCCGT TCGACGACCC GACCATCCTG GGCAACTACC TGGCGACCGA CGAGGACCGG
CGCGCGATCC GCGAGGGGGT GCGCATCGGC CGCGACGTGG CCGCCCAGGC GGCGCTGGAT
CCCTATCGGG AGTCCGAATA CGCGCCAGGC GCCGACATCA AGACCGACGC CGAGATCGAC
GCCTGGGTCC GTGCCAAGGC CGAGACCATC TATCACCCGG TCGGCACCTG CCGCATGGGC
GCGGCGGGCG ACCCGCTGGC CGTGGTCGAT GACCAGCTGC GCGTACAGGG GATCGAAGGC
CTGCGGGTGA TCGACGCCTC GGTGATGCCC ACCCTGATCG GCGGCAACAC CAACGCCCCC
ACGATCATGA TCGCCGAACG GGCTTCCGAC CTGATCCGCG GCAAGGTCCT GCTGCCGCCG
GTCGAGGTTC CGGTGTTCGA GGACGGAAGG GCGGTCGCGG CTTAA
|
|---|
| Protein sequence | MASTRYDYVI IGAGSAGCVL AARLTEDANV KVLLLEAGGK NTSILVKMPA GVGELIKAKG
DQNWGFWTEA EPHLNDRKLW WPRGKGLGGS SAINGMIYIR GHARDYDQWR QMGLSGWSYA
EVLPYFKRSE THHGGGDAYH GGAGPLHVSG GESKSPFYPA LIEAGRQAGH ATTKDFNGFR
QEGFGPYDLT IRDGKRWSAA AAYLTAALAR PNLTCVTEAR TTRILIENGK AIGVEYVVGT
DPARLVAHAD AEVLLSAGAV QSPHILQLSG VGDPDDLKAH GIAPVHEAKG VGANLQDHLD
VCLSWTSKNL VTAYSANKGL KKLGTGLSYM LLGKGLGRQQ FLESGAFLKS RPDLDRPDLQ
IHGVLAIMQD HGKTMIEKDG FTLHVCQLRP ESRGKVGLRS ADPFDDPTIL GNYLATDEDR
RAIREGVRIG RDVAAQAALD PYRESEYAPG ADIKTDAEID AWVRAKAETI YHPVGTCRMG
AAGDPLAVVD DQLRVQGIEG LRVIDASVMP TLIGGNTNAP TIMIAERASD LIRGKVLLPP
VEVPVFEDGR AVAA
|
|---|
| |