| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_3245 |
|---|
| Symbol | |
|---|
| ID | 5900700 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010338 |
|---|
| Strand | - |
|---|
| Start bp | 3507830 |
|---|
| End bp | 3509455 |
|---|
| Gene Length | 1626 bp |
|---|
| Protein Length | 541 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641563750 |
|---|
| Product | glucose-methanol-choline oxidoreductase |
|---|
| Protein accession | YP_001684870 |
|---|
| Protein GI | 167647207 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCTTCGA GCTTCGACTA CATCGTCGTC GGCGGCGGCT CGGCGGGCAG CGTGGTGGCC
GCCCGCCTAA GCGAAAGATC GGATCTGCAA ATCCTGCTGC TGGAGGCGGG CGGACGCGAT
CGCGGCCTGC TTCTGCAAAT GCCTCTGGCC TTCCGCCTGC TCCGGGCCAA GATGTTGTTC
GACTGGGGCC TGTCCTCCGA ACCGGAGCCT TACGCCAATG ACCGCAGCAT CCCGGCCGCC
CGAGGCCGGG TCCTGGGAGG CAGTTCGTCG GTCAACGGCA TGATGTATTC GCGCGGCCAC
CCGCGCGACT ACGACCAATG GGCGCAGATG GGAGCCCAGG GCTGGTCGTT CGAGGAGGTC
CTGCCCTATT TCAGGCGATC CGAGGACAAC TGGCGCGGGG CGTCCCACTG GCACGGCGCC
GGCGGGCCGC TGTCGGTCTC GCCCATGTCG CACGACGACC CTCTTGTGCG GGCCATCGAG
GCGACGGCCC GGGGATTGGG TTATCCCGTC ACCGATGACT TCGAGGGAGA GCAGCCCGAG
GGTTTCGGCC TGCCGGACCT GACCGTTCGC AACGGGCGGC GCGCCAGCGC CTCGCAAGCC
TATCTGCACC CGGCCCGGCG CCGAACAAAC CTGACGGTCG TGACGTCCGC CCACGTTCGA
CGGGTGTTGA TCGAAGGCGG CCGAGCGGTC GGCGTCGTCT ACCAGGTCGA TGGCCGGGAG
CGGACGGCGC GCTGCGACCG GGAGGTAGTG CTATGCGGCG GCGCCTATGC CTCGCCCCAA
CTCCTGATGC TGTCGGGCGT GGGGCCAGCC GACCACCTGC GCGATCACGG CATCGACGTT
CTGGCCGACC TTCCGCAGGT CGGCCGAAAC CTCCAGGAAC ACCCGCTGAC GCCGATGGGC
TTTCGCGGCA AGAAGCCGTT CGACTTCGGC GGCCAGCTTC GCGCCGACAA AGTGGCCCTG
GCCGCAGCGC GCTGGCGCCT GACGGGCCAG GGCTTGATGG CCACCCAACC CCTGACCTCC
ATCGCCTTCC ACAAATCCAG GCCGGGACTG GAGCGACCGG ACATCGAGAC CATGTTCATG
CCCACCAGCC TGGACGCCAA GGTCTGGTTC CCCGGCGCGC GCAAACGGGC CGACGACATG
CTGACCGTCC TCAATGTCGC CTTGCGGCCC AGCAGCCGCG GGGCGGTGAC GCTGCGTTCC
GCCGATCCCA TGGCCAAGCC GAAGATCCTG TTCAACCTCT TGTCGGATCC CGACGACATG
GCGCTTCTGC GCCACAGCCT GCGCTGGACT CGCGAGCTCC TGCGCCAGGG GCCGATCGCC
GACTATGTGG GCGAGGAAGT CTTCCCGGGG CCGGCCCTGC AAAGCGACGC TCAGCTCGAC
GCCTTCACTC GGGCCTCCAG CGTCACCGCC CAGCACCCGG TCGGCACGTG CCGCATGGGC
CAGGACGCCG GCGCCGTGGT CGATCCGCGT CTGCGGGTGA GGGGCCTGCA AGGCCTGCGG
GTCGCCGACG CCTCGGTGAT GCCGACCCTG ATCGGCGGCC ACACCAATGC GCCGGCGATC
ATGATCGGCG AGCGCGCCGC GGCGATGATG CTGGAGGACG CCCAGGGCGC GCCGCCCAGG
GCCTAG
|
|---|
| Protein sequence | MASSFDYIVV GGGSAGSVVA ARLSERSDLQ ILLLEAGGRD RGLLLQMPLA FRLLRAKMLF
DWGLSSEPEP YANDRSIPAA RGRVLGGSSS VNGMMYSRGH PRDYDQWAQM GAQGWSFEEV
LPYFRRSEDN WRGASHWHGA GGPLSVSPMS HDDPLVRAIE ATARGLGYPV TDDFEGEQPE
GFGLPDLTVR NGRRASASQA YLHPARRRTN LTVVTSAHVR RVLIEGGRAV GVVYQVDGRE
RTARCDREVV LCGGAYASPQ LLMLSGVGPA DHLRDHGIDV LADLPQVGRN LQEHPLTPMG
FRGKKPFDFG GQLRADKVAL AAARWRLTGQ GLMATQPLTS IAFHKSRPGL ERPDIETMFM
PTSLDAKVWF PGARKRADDM LTVLNVALRP SSRGAVTLRS ADPMAKPKIL FNLLSDPDDM
ALLRHSLRWT RELLRQGPIA DYVGEEVFPG PALQSDAQLD AFTRASSVTA QHPVGTCRMG
QDAGAVVDPR LRVRGLQGLR VADASVMPTL IGGHTNAPAI MIGERAAAMM LEDAQGAPPR
A
|
|---|
| |