| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_2619 |
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| Symbol | |
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| ID | 5900074 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caulobacter sp. K31 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010338 |
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| Strand | + |
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| Start bp | 2841693 |
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| End bp | 2845160 |
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| Gene Length | 3468 bp |
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| Protein Length | 1155 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641563110 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_001684244 |
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| Protein GI | 167646581 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.205951 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTACG ACGCCAAACA GATCGCCAAG GCCGCCGGGG GCCTGACCCT GGCCGGGGCG
CCGGAAGGCT TCGACGCGCT GGTCATGGCC GACATCGCCC GCGCGCGCGG CGGCCTGACC
GCCTTCGTGG CCCGCGACAC CGCCCGGGCC AGCGCCTTCA TCGACGCCCT GAAGTTCTTC
GCCCCCGAGA TCGAGGCGGT GCTGTTCCCG TCCTGGGACT GCCTGCCTTA CGACCGCATC
GGCCCTTCGG CCGGCGTCGC CGCCACGCGG ATGGCCACCC TGCACCGCCT GGCCGAGGGC
CTGGGCAAGG ACAAGGCGGC CATCCTGGTC ACCGCCGCGC CGGCCCTGCT GCAGCGCGTG
CCCGAGAAGA CCGTGCTGCT GCGCGCCAGC TACGGCGCCA AGGTCGGCAA CGTCGTCGAT
GTGGCGGACC TGGAGCGCTA TTTCGCGATC AACGGCTATG TCCGCGCCTC CACCGTGTCA
GAGCGCGGCG AGTTCGCGAT CCGCGGCGGC GTGATCGACG TCTATCCGCC GGCCGCCGAG
GAGCCGGTGC GCCTGGACCT GTTCGGCGAC ACCCTGGAAA GCATCCGCGC CTTCGATCCG
GAAACCCAGC GCTCGACCAA GCAACTGCGT GAGATCCAAC TTCTGCCGGT CAGCGAGGCC
CTGCTCGACA AGGAGGGCAT TTCGCGGTTC CGCTCGGGTT ACATCCGCGA GTTCGGCGCG
CCGGGCGATG ACGCGCTGTA CGCCACGGTC AGCGAGGGCG GCCGCCGCGC CGGGCTCGAA
CACTGGCTGC CGCTGTTCTA CGAGCGGATG GCGACCCTGT TCGACTATCT GCCCGACGGA
GCCCTGGTCG GCATCGACCA CCAGGTGACC GAGAGCCGCG ACGAGCGCCT GGCGATGATC
GCCGACGCCT ATGACGCTCG GGCCTCGGCC GACCGCAAGT CGGCCTATCG CCCGCTGAAG
CCGGACGCCC TCTACCTGAC CGCCGCCGAG TGGGACCAGG CCGTCGAGGA CCGGACCCAC
CGCAAGTTCA CGCCGTTCCA GCCCCAGGGT CTCGACGTCG TCGACATGGG CGCCAAGCTC
GGACGCACCT TCGCCGCCGA GCGCGCCCAG GACAGCGTCA ACCTGTTCCA GGCCACAGCC
GATCACGCCA CCACGCTAGC GGGGCAGGGC AAGCGCGTGC TGTTCGCCTC GTGGTCCGAG
GGCTCGTCCG AGCGCCTGGG CATGATGCTG GCCGACCACG GTATTAAAAA GCTAAGCTTC
GCCGCCTATT GGCAGGCCGC CAAGGCCGCC GATCCCAAGA TCCCGCAGCG CGTGGTCCTG
CCGCTGGACA ACGGCTTCGA GACCGAGACC CTCGTCGTCA TCTCCGAGAC CGACATCCTC
GGCGACCGCT TGGCCCGGCC GCGCAAGAAG CGCCGCGCCG CCAACTTCCT GGCCGAGGCC
AGCGCCCTGA CGCCCGGCGA CCTGGTCGTC CACATCGACC ACGGCATCGG TCGCTATGAG
GGGCTCAAGA CGCTCGACGT CCAGGGCGCG CCCCACGACT GCCTGGACCT GCTGTATGGC
GGCGAGGCCA AGCTCTACCT GCCGGTCGAA AACATCGACC TGCTGACCCG CTACGGGACC
GACGCCGAGA ACGTCCAGTT GGACAAGCTG GGCGGCGCGG CCTGGCAGGG GCGCAAGTCC
AAGGCCAAGG AACGCCTGAG GGTGATGGCC GAGGGCCTGA TCCAGATCGC CGCGGCCCGC
CAGTTGAAGT CGGTGGAAGA GACCGACCCG CCGCACGGGG TGTTCGACGA GTTCTGCGCG
CGCTTCCCCT ATGAGGAGAC CGACGACCAG TTGTCGGCCA TCGCCGACGT TCTGGAAGAT
CTCGGCTCGG GCAAGCCGAT GGACCGGCTG ATCTGCGGCG ACGTGGGTTT TGGCAAGACG
GAAGTCGCCC TGCGCGCGGC GTTCGTGGTG GCCATGAGCG GCAAGCAGGT GGCCATCGTC
TGCCCGACCA CGCTGCTGGC TCGCCAGCAC TACAAAACCT TCAAGGACCG CTTCCAAGGC
TGGCCGGTCA AGGTCACGCG CCTGTCGCGC CTGGTGACCG GCAAGGAAGC CGCCGAGACC
CGCGAGGGCC TGGCCAACGG CCAACTGGAG ATCGTGGTCG GCACCCACGC CATCCTGTCC
AAGCAGGTCT CGTTCAAGGA CCTTGGCCTG GTCATCGTCG ACGAGGAGCA GCACTTCGGG
GTCAAGCACA AGGAGAAGCT GAAAGAGCTT CGCGCCGACG TGCACATGCT GACCCTGACC
GCCACGCCGA TCCCGCGCAC CCTGCAGATG GCGCTGTCGG GCATCCGCGA GATGTCGATC
ATCGCCACCC CGCCGGTCGA TCGCCTGGCG GTGCGCACCT ATATCAGCCC CTTCGACCCG
GTGACCCTGC GCGAGGCCCT GCTGCGCGAG AAGTATCGCG GCGGCCAGGC CTATTACGTG
GTGCCGCGCA TCAAGGACCT GGAGGAGATC GAGAAGTTCC TTCGCACCCA AGTGCCTGAG
GTCAAGTACG TGGTCGGCCA TGGCCAGATG GCCCCGACCC AGCTGGAAGA CGTGATGACG
GCCTTCTACG AGGGCCAGTA CGACGTGCTG CTCGCGACCA CGATCGTGGA AAGCGGGCTC
GATATCCCGT CGGCCAACAC CCTGATCGTC CATCGCGCCG ACATGTTCGG CCTGGCCCAG
CTCTACCAGA TCCGCGGCCG TGTCGGTCGC TCCAAGGCCC GCGCCTACGC CTATCTGACC
ACGCCCAACG AGAAGCAGAT CACCCTGTCG GCCGAGAAGC GCCTGAAGGT GCTGCAATCG
CTGGACAGCC TGGGCGCCGG CTTTCAGCTG GCCAGCCACG ACCTGGACCA GCGCGGCGGC
GGCAACCTGC TGGGCGACGA GCAGAGCGGC CACATCAAGG AGATCGGCGT CGAGCTGTAC
CAGCAGATGC TGGAGGACGC CGTCGCCGAG CTGCGCGAGC GCCAGGGCGC CGAGGCCCTG
ATCGAGGATC GCGGCTGGTC GCCGCAGATC AACACCGGCG CGGCCGTGAT GATCCCCGAC
GACTACGTGC CCGACCTGAA CGTGCGCCTG TCGCTCTATC GCCGCCTGTC GGAAGCCGAA
AAGGCCGCCG ACCGCGAAGC CCTGGCCGCC GAGCTGATCG ACCGCTTCGG CCCGCTGCCG
CCCGAGACCG ACAGCCTGCT GAAGGTGGTC GCCATCAAGG GCCTGTGCCG CGAAGCCAAT
GTCGCCAAGA TCGACGTCGG GCCCAAGGGC GCGGTCGCCA GCTTCCGCAA CGACATCTAC
GCCAACCCGC TGGCGCTGAT GCAGTTCGTG GCCAAGAACA ACGTCGTCTG GAAGGTGCGT
CCCGACCAGA AGGTGGTGAT CAAGGGCGAG TGGGACACGC CCGCCCGGCG GCTGGACGCG
GCCGAGAAGA TCCTGGCGCA ACTGGTCAAG CTGGCCAAGA CGGCGTGA
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| Protein sequence | MAYDAKQIAK AAGGLTLAGA PEGFDALVMA DIARARGGLT AFVARDTARA SAFIDALKFF
APEIEAVLFP SWDCLPYDRI GPSAGVAATR MATLHRLAEG LGKDKAAILV TAAPALLQRV
PEKTVLLRAS YGAKVGNVVD VADLERYFAI NGYVRASTVS ERGEFAIRGG VIDVYPPAAE
EPVRLDLFGD TLESIRAFDP ETQRSTKQLR EIQLLPVSEA LLDKEGISRF RSGYIREFGA
PGDDALYATV SEGGRRAGLE HWLPLFYERM ATLFDYLPDG ALVGIDHQVT ESRDERLAMI
ADAYDARASA DRKSAYRPLK PDALYLTAAE WDQAVEDRTH RKFTPFQPQG LDVVDMGAKL
GRTFAAERAQ DSVNLFQATA DHATTLAGQG KRVLFASWSE GSSERLGMML ADHGIKKLSF
AAYWQAAKAA DPKIPQRVVL PLDNGFETET LVVISETDIL GDRLARPRKK RRAANFLAEA
SALTPGDLVV HIDHGIGRYE GLKTLDVQGA PHDCLDLLYG GEAKLYLPVE NIDLLTRYGT
DAENVQLDKL GGAAWQGRKS KAKERLRVMA EGLIQIAAAR QLKSVEETDP PHGVFDEFCA
RFPYEETDDQ LSAIADVLED LGSGKPMDRL ICGDVGFGKT EVALRAAFVV AMSGKQVAIV
CPTTLLARQH YKTFKDRFQG WPVKVTRLSR LVTGKEAAET REGLANGQLE IVVGTHAILS
KQVSFKDLGL VIVDEEQHFG VKHKEKLKEL RADVHMLTLT ATPIPRTLQM ALSGIREMSI
IATPPVDRLA VRTYISPFDP VTLREALLRE KYRGGQAYYV VPRIKDLEEI EKFLRTQVPE
VKYVVGHGQM APTQLEDVMT AFYEGQYDVL LATTIVESGL DIPSANTLIV HRADMFGLAQ
LYQIRGRVGR SKARAYAYLT TPNEKQITLS AEKRLKVLQS LDSLGAGFQL ASHDLDQRGG
GNLLGDEQSG HIKEIGVELY QQMLEDAVAE LRERQGAEAL IEDRGWSPQI NTGAAVMIPD
DYVPDLNVRL SLYRRLSEAE KAADREALAA ELIDRFGPLP PETDSLLKVV AIKGLCREAN
VAKIDVGPKG AVASFRNDIY ANPLALMQFV AKNNVVWKVR PDQKVVIKGE WDTPARRLDA
AEKILAQLVK LAKTA
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