| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_1769 |
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| Symbol | ligD |
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| ID | 5899224 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Caulobacter sp. K31 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010338 |
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| Strand | + |
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| Start bp | 1868191 |
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| End bp | 1870947 |
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| Gene Length | 2757 bp |
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| Protein Length | 918 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 641562259 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_001683396 |
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| Protein GI | 167645733 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.242945 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCCAGG GACAACTCGC CGAATATCGC CGCAAGCGCG ATTTCCAGAA GACCGCCGAG
CCGAGCGGCG ACGCCGCGGT CGCATCCGCG CCGCACGCCC GCTTCGTGAT CCAGAAGCAC
GACGCCACGC GGCTGCACTA CGACTTTCGC CTGGAGGTCG ACGGGGTGCT GAAGTCGTGG
GCGGTGACCA AGGGGCCGTC CCTGGATCCC GCCGACAAGC GGCTGTCGGT GGAGGTCGAG
GACCATCCGC TGGACTATGG CGACTTCGAG GGCACGATCC CCAAGGGCCA GTACGGCGGC
GGGACGGTGC AGCTGTGGGA CCGCGGCTAT TGGGCGCCCG AACCCGGCTT CGAGGATGTG
GCCAAGGCGC TGAAGAAGGG CGAGCTGAAG TTCGTGCTGG AGGGCGAGCG GCTGCATGGC
TCGTGGGTGC TGGTGCGGAT GAACTGGGAC CGCAACGCCA AGGATGGCCC CAAGCGACAA
GTAGGGGGCG GGCGCTCCAA CTGGCTGCTG ATCAAGCACA ATGACGAGGC CGCGCGGCCG
GGCGAAGGGG CGGCCGTGCT GGAGGAGGAC GCCTCGATCG CCTCGGGCCG GACCATGTCC
GACATCGCCG CCGGCAAGGG CAAGGGACCG TCGGCGTTCA TCCTGAAGAC CAAGGGCAAG
GGCGACGCCG TCTGGACCTC GCGGACCAAG GCCGAGCGCG AGGCGCTGCA GAAGGAGGCG
CAGGACACGC GGGCGGTCGA GCCCACCCCA TCCCGTCTTC CCGGCGAAGG CCAGGACCCA
GATTCATCCG GAGAGTCGGC AGGGCGTCAC CTGGGTCCCG GCCTTCGCCG GGGAGACGGA
GACAAGGCGA CCAAGAAAGC CAAGGCCAAG ACCGCTGTCC TGCCCGACTT CATCGAACCT
CAACTCTGCA AGTCTCTGGA TCGCCCGCCG TCCGGACCCG GCTGGGCGCA TGAGATTAAG
TTCGACGGCT ATCGCGTGCA GTTGCGCGTC GAGGGCGGTC GGGCGACCCT GCGCACCCGC
AAGGGTCTGG ACTGGACAGA GAAGTTCGCC GCCATCGCGC GGGCCGCCGC GGACCTGCCC
GACAGCATTA TAGACGGCGA GGTCGTGGCC CTGGACGCCG CCGGCCAGCC CGACTTCGCC
GGCCTGCAGG CGGCGCTGTC GGACGGCAAG ACCGGCGACC TGATCTTCTT CGCTTTCGAC
CTGCTGGCGG AGGGCGGCGA GGACCTGCGC GCCCTGCCGC TGCACGAACG CAAGGCGCGG
CTGAAGGCGA TGATGGGCGA GGACGAGCCG CGCCTGCGTT TCGTCGACCA CTTCGAGACG
GCCGGGGACG CGGTGCTGCT GTCGGCCTGC AAGCTGGAAC TGGAAGGCAT CATCTCCAAA
CGGCTGGACG CCCCATACCG ATCGGGGCGC AGCGAGACCT GGACCAAGGC CAAGTGCCGG
GCCGGCCATG ACGTGGTGAT CGGTGGCTAT ACGACGACCG GCTCGGCGTT CCGCTCGCTG
ATCGCCGGCG TCATGCGCGA CGGAAAGTTG ACCCATGTGG GCCGAATCGG CACCGGCTTT
GGCCGCGACA AGGTGGGCAA GCTGCTGCCG AGGCTGAAGG CCTTGGAGAC CGACACCTCG
CCGTTCGAAG GCAAGGGCGC GCCGCGCAAG GCCGACGACA TCCACTGGGT GAAGCCGGAA
CTGGTGGCCG AGATCGAATA TGCCGGTTTC ACGGGGGACG GCTCGATCCG CCAGGCCTCG
TTCAAGGGCC TGCGCGAGGA CATTCCAGCC AGCGAGGTCC AGGCCGAGGT TCCGGCCAAG
GCGGAAACCG CCGAGCTGGC GACGCCCACC CCCAAGGCCG CGCCCAAGTC CCAGACGATC
GCCACCGCCA AGACCGATAG CATCGTGCTG GGCGTGACGA TCTCCAAGCC CGACAAGCCG
CTGTGGCCGG ACGTCGACGG CGCGCCGGGG ACCAAGATCG ACCTGGCCCG CTACATGGCG
GCGATCGGCG ACTGGATGCT GCCGCACGTG AAGGGCCGGC CGGCCTCGAT CATCCGGGTT
CCCGACGGCA TCGGCGGCGA GACCTTCTTC CAACGCCACG CCATGCGCGG GATGTCGTCG
CTGATCGACC TGGTTTCGGT CAAGGGCGAC AAGCAGCCCT ACATCCAGTT CAACCGGGTC
GAGGCGCTGA TCGCCGCCGC CCAGATCGCC GCCGTCGAGA TCCATCCCTG GAATTGCCAG
CCGGGCGATC CGGAGGTGGC CGGCCGCCTG GTGTTCGACC TGGATCCCGC GCCGGGCGTC
ACCTTCGAGG ACGTGATCGC CGGCGCGCGC GAGATCCGCG ACCGGCTGGA GGAACTGGGC
CTGGTCAGTT TCTGCAAGAC CACCGGCGGC AAGGGCCTGC ACGTGGTCAC GCCCTTGTCC
GATAAAGTAG AGTGGGCTGT AGCAAAGACC TTCGCCCGCG AGGTCTGCGC CCGCATGGCC
GCCGACGCGC CGGACAAGTA CCTGATCACC ATGAGCAAGA AGGCGCGCGA GGGCCGCATC
TTCCTCGACT ACCTGCGCAA CGACCGCACC TCGACCGCCG TGGCGCCGCT TTCGGCCCGC
GCCAGGCCGG GGGCGACGGT GTCGATGCCG CTGAACTGGA CCCAGGTAAA GGCGGGGCTG
GACCCGACGA AGTACACCAT CCGCACCGTC CCGGACCTGA TCGCCAAGAG CAGGGCCTGG
GAGGACTATT TCGACGCCGC CAAGCCGCTG AAGGCGGCGA TCAAACGGCT GGGGTGA
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| Protein sequence | MAQGQLAEYR RKRDFQKTAE PSGDAAVASA PHARFVIQKH DATRLHYDFR LEVDGVLKSW
AVTKGPSLDP ADKRLSVEVE DHPLDYGDFE GTIPKGQYGG GTVQLWDRGY WAPEPGFEDV
AKALKKGELK FVLEGERLHG SWVLVRMNWD RNAKDGPKRQ VGGGRSNWLL IKHNDEAARP
GEGAAVLEED ASIASGRTMS DIAAGKGKGP SAFILKTKGK GDAVWTSRTK AEREALQKEA
QDTRAVEPTP SRLPGEGQDP DSSGESAGRH LGPGLRRGDG DKATKKAKAK TAVLPDFIEP
QLCKSLDRPP SGPGWAHEIK FDGYRVQLRV EGGRATLRTR KGLDWTEKFA AIARAAADLP
DSIIDGEVVA LDAAGQPDFA GLQAALSDGK TGDLIFFAFD LLAEGGEDLR ALPLHERKAR
LKAMMGEDEP RLRFVDHFET AGDAVLLSAC KLELEGIISK RLDAPYRSGR SETWTKAKCR
AGHDVVIGGY TTTGSAFRSL IAGVMRDGKL THVGRIGTGF GRDKVGKLLP RLKALETDTS
PFEGKGAPRK ADDIHWVKPE LVAEIEYAGF TGDGSIRQAS FKGLREDIPA SEVQAEVPAK
AETAELATPT PKAAPKSQTI ATAKTDSIVL GVTISKPDKP LWPDVDGAPG TKIDLARYMA
AIGDWMLPHV KGRPASIIRV PDGIGGETFF QRHAMRGMSS LIDLVSVKGD KQPYIQFNRV
EALIAAAQIA AVEIHPWNCQ PGDPEVAGRL VFDLDPAPGV TFEDVIAGAR EIRDRLEELG
LVSFCKTTGG KGLHVVTPLS DKVEWAVAKT FAREVCARMA ADAPDKYLIT MSKKAREGRI
FLDYLRNDRT STAVAPLSAR ARPGATVSMP LNWTQVKAGL DPTKYTIRTV PDLIAKSRAW
EDYFDAAKPL KAAIKRLG
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