| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_1152 |
|---|
| Symbol | |
|---|
| ID | 5898607 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010338 |
|---|
| Strand | + |
|---|
| Start bp | 1217970 |
|---|
| End bp | 1220828 |
|---|
| Gene Length | 2859 bp |
|---|
| Protein Length | 952 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641561634 |
|---|
| Product | conjugal transfer relaxase TraA |
|---|
| Protein accession | YP_001682780 |
|---|
| Protein GI | 167645117 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member |
|---|
| TIGRFAM ID | [TIGR02768] Ti-type conjugative transfer relaxase TraA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.00271398 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 0 |
|---|
| Fosmid unclonability p-value | 0.000000434964 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | unclonable |
|---|
| |
Sequence |
| Gene sequence | ATGGCGATCT ACCACTTCTC CGTCAAAGTC ATCAGCCGCG CTACAGGGGC CAGCGCCGTG
GCCTCGGCCG CCTATCGCTC CGCCTCGCGG CTGCACGACG AGCGGCTGGA TCGCGATCAT
GACTTCACCA ACAAGAGCGG CGTCGTCCAT TCCGAGGTCA TGCTGCCGGA TGGCGCGCCC
GAGCATCTGT CGGATCGCGC AACGCTGTGG AACACCGTAG AGGCCGGCGA AAAGCGCAAG
GACGCCCAGC TCTCGCGCGA GGTCGAGTTC GCCATCCCCC GCGAGATGGA CCAGGCCCAG
GGCATCGATC TCGCCCGCGA CTTCGTCCAG CGCGAGATGG TCGATCGCGG CATGGTCGCC
GATCTCAATG TGCATTGGGA CATCGGCGCG GACGGCCTGG CCAAACCCCA CGCCCACGTC
ATGTTGTCGA TGCGGGAAGT GGGCGAGGAC GGCTTCGGCG CCAAGGTTCG CGACTGGAAC
CGCACCGAGT TGGTGGAGCA CTGGCGGGAG GCTTGGGCCG ACCACGTCAA CGAGCGGCTG
GCGCAACTCG ACATCGACGC GCGGATCGAT CACCGCAGCC TGCAAGACCA GGGCATCGAC
CTTGAGCCGC AGCACAAGAT CGGCCCGGCC GCTGGGCGCA GGGCCGACGA AGGCCTGGAG
GCTGAGCGGC TCGACGAGCA CCACGAGATC GCGCGGGCCA ATGGCGAGCG GATCATCGCC
GATCCGCGCA TTGCTCTGGA CGCCATCACC AAGCAGCAGG CGACCTTCAC CCGCCGCGAC
CTGGCGATGT TCGTTCACCG CCATTCGGAT GGGAAGGAAC AGTTCGACCG CGCCATGGGC
GCGGTGCAGG CCTCGCCCGA ACTTGTCGCT CTGGGCCAGG ACGGGCGCGG CCAGGACCGC
TTTACCAGCC GCGAGATGAT CGCGGTCGAA GATCGCCTGC ATCGGGCTTC GGCTTTGATG
GCCGAGCGCC GGGCGCATCG GGTCAGCGAA CTCGATCAGC GCCGCGCCCT GACACGCGCG
GAGCAGCGCG GTCTGGTCCT GTCCGGTGAG CAGAAGGCGG CGTTCGAGCA CGTCACAGCG
ACCCGCGATC TGGGCGTTGT GGTCGGCTAT GCCGGCACGG GCAAGTCGGC GCTGCTAGGC
GTGGCGCGCG AGGCCTGGGA AGACGCCGGC TATCGCGTTC AGGGCCTGGC CTTGTCGGGC
ATAGCCGCCG AGAACCTGGA GGGCGGATCG GGCATCGCCT CGCGCACGAT CGCCAGCCTG
GAGCATCAGT GGAGCCAGGG CCGCGAACTA CTGGATACGC GCGACGTGCT GGTGATCGAC
GAGGCCGGCA TGATCGGCTC TCGGCAGATG GAGCGGTTGC TGTCGGCGGC CGAGAAGGCC
GGCGCCAAAG TGGTGCTGGT CGGCGATCCC GAGCAGCTTC AGGCCATCGA GGCCGGCGCG
GCGTTCCGGT CGATCGCGGA GCGCCATAAC CACGTCGAGA TCACCCAGGT TCGCCGTCAG
CATGAGGACT GGCAGCGCGA CGCCACGCGG CACCTGGCCA CCGGCCGGAC CGGCGAGGCG
CTGGTGGCTT ACGAGGCGCG CGGCATGGTC CACGCCGCCG AGACGCGCGA CCAGGCACGC
GAGGAGTTGG TCGAGCGGTG GGATCGCGAC CGCGTGGCCG AGCCGGGCAA GAGCCGGATC
ATCCTCACCC ACACCAATGA CGAGGTGCGC GACCTCAATC TGACCGCGCG CGAGCGGCTG
CGCCAGGCTG GCGCCTTGGG GCAGGACGTG ACGGTCAAGG CCGAGCGCGG CGAGCGCGCC
TTGGCGGCCG GCGATCGGCT GATGTTCTTG AAGAACGATC GTGGGCTCGG CGTGAAGAAC
GGCATGCTCG GCGAGATCGA GCAGGTCTCG CCCACCCAGA TGACCGTACG ACTCGACGCG
GGGCGCTCGG TCGCCTTCGA CCTGAAGGAC TACGCCCAGG TCGATCACGG CTATGCGGCC
ACCATCCACA AGAGCCAGGG TGTCACTGTC GATCGGACCC ACGTGCTGGC GACGCCGGGC
ATGGATCGTC ACGGCGCCTA TGTCGCCCTG TCACGCCACC GCGACAGCGT GCAGCTCCAT
TACGGCCGCG ACGAGTTCGA AGACTTGGGC AAGTTGACCC GTGTCCTGTC GCGCGAGCGG
GCCAAGGACA TGGCCAGCGA CTTTGCCGAA CGGCGCGACA TTCATGTGCC GCCGTCGATG
CGGCCCAAGG AGCCGCAGCA GCGCGAGCGC GGGATGTTCG CCGGGTTCAG GCCGGTCAGT
CCCGCGCATC AGCCGGCGGC GCCGGCGCGC GATGACGATC AGCTTGCTCG ACGCCGGTCG
ATCGAGCGCC ACGCCCGCGC CGCGGCCGAC GTCATGCGCA TGAACGACCG CGGCTTGCCG
GTGCTCGCCC ATCAGCGGCG GACGCTGGAG CAGGCGCGCG AGGCCATGGG GAAGATCGGT
CCGCACGCAG CGAAGGATCT GGAGCGGGCC TATGTCCGTG ATCCGGCCTT GGCCGGCGAG
ACCGCCTCAG GGCGCACTCA GCGGGCTATC CGCGTCCTTC AGCTTGAGGC CGAGGTGAGG
GCCGATCCGC GTTTACGCGC CGACCGCTTC GTCGAGCGTT GGCAGGGTTT GGAGCGCCAG
CGCACGGCCT TGCACCGCGC GGGCGACATG ACCGGCGCCG GCCAGGTCAA GGATCGTATG
GGCGCGATGG CCAAGAGCTT GGAGCGCGAT CCGCAGGTGG ACTCGCTGCT GCGCGCTCGG
CGGCCCGAGC TTGGGCTTCC CGCCGAGATG GGGCGCAGCG TTGGGCAGGG CCTTTCTGAC
TACCTCGGCA TCGGGCGCGG CCGAGGTCTT GGCTTGTAG
|
|---|
| Protein sequence | MAIYHFSVKV ISRATGASAV ASAAYRSASR LHDERLDRDH DFTNKSGVVH SEVMLPDGAP
EHLSDRATLW NTVEAGEKRK DAQLSREVEF AIPREMDQAQ GIDLARDFVQ REMVDRGMVA
DLNVHWDIGA DGLAKPHAHV MLSMREVGED GFGAKVRDWN RTELVEHWRE AWADHVNERL
AQLDIDARID HRSLQDQGID LEPQHKIGPA AGRRADEGLE AERLDEHHEI ARANGERIIA
DPRIALDAIT KQQATFTRRD LAMFVHRHSD GKEQFDRAMG AVQASPELVA LGQDGRGQDR
FTSREMIAVE DRLHRASALM AERRAHRVSE LDQRRALTRA EQRGLVLSGE QKAAFEHVTA
TRDLGVVVGY AGTGKSALLG VAREAWEDAG YRVQGLALSG IAAENLEGGS GIASRTIASL
EHQWSQGREL LDTRDVLVID EAGMIGSRQM ERLLSAAEKA GAKVVLVGDP EQLQAIEAGA
AFRSIAERHN HVEITQVRRQ HEDWQRDATR HLATGRTGEA LVAYEARGMV HAAETRDQAR
EELVERWDRD RVAEPGKSRI ILTHTNDEVR DLNLTARERL RQAGALGQDV TVKAERGERA
LAAGDRLMFL KNDRGLGVKN GMLGEIEQVS PTQMTVRLDA GRSVAFDLKD YAQVDHGYAA
TIHKSQGVTV DRTHVLATPG MDRHGAYVAL SRHRDSVQLH YGRDEFEDLG KLTRVLSRER
AKDMASDFAE RRDIHVPPSM RPKEPQQRER GMFAGFRPVS PAHQPAAPAR DDDQLARRRS
IERHARAAAD VMRMNDRGLP VLAHQRRTLE QAREAMGKIG PHAAKDLERA YVRDPALAGE
TASGRTQRAI RVLQLEAEVR ADPRLRADRF VERWQGLERQ RTALHRAGDM TGAGQVKDRM
GAMAKSLERD PQVDSLLRAR RPELGLPAEM GRSVGQGLSD YLGIGRGRGL GL
|
|---|
| |