Gene Caul_1078 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaul_1078 
Symbol 
ID5898533 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaulobacter sp. K31 
KingdomBacteria 
Replicon accessionNC_010338 
Strand
Start bp1137964 
End bp1140147 
Gene Length2184 bp 
Protein Length727 aa 
Translation table11 
GC content72% 
IMG OID641561560 
Product1A family penicillin-binding protein 
Protein accessionYP_001682706 
Protein GI167645043 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0744] Membrane carboxypeptidase (penicillin-binding protein) 
TIGRFAM ID[TIGR02074] penicillin-binding protein, 1A family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.319269 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGATC CCGCCGACGG TCCCGAGAAC GCCGAGCCGG AGGCCTCGCC CGAGACCGAG 
GCCGCCCTGT CGAAACCGAA GAGGGTCAGG AAGCCGCGCC CGAAGACCGC GGCGGCGCCG
GAGCCGAAGC CCAGCGACCT CGCCGACGGC GACGCCGGAC TGGAAGCGCC GAGCCCCGAG
CCGTCCGCCG AGGCCGAGAT CGAAGCCGTC GAGGCCGAGG TCGTCGCCGA CGCCACGCCC
CCCGCCCCGC CCGGCGTCCC GTTCTGGAAG CAGAAGCTGT GGAAGCAGCG CCCCTGGCAG
ATCGGGGCCG CCGCCGTGGT CCTGGCGATC GTCGCGGTGA TCGGCTGGCT GCTGTGGTCC
CTGCCCCTGG GCCGCGCCCT GGAGCCGGTG GCCAATCCGG CGCTGGTGCT GGTGGCCACC
GACGGCTCGC CCATCGCCCG GCGCGGCTCG TACAAGGAAG CGCCGATCGA GGTGGCCAAG
CTGCCGGCCT ATGTACCAGG GGCGTTCATC TCCATCGAGG ACCGGCGGTT CTACACGCAC
TGGGGCGTCG ACCCCAAGGC CATCGCCCGC GCCATGAACG CCAACCGCAA GGCCGGCGGA
GTGTCGGAGG GCGGATCGAC CATCACCCAG CAACTGGCCA AGAACGCCTT CCTCAACAGC
GACCGCAACC TGCGCCGCAA GGCCCAGGAG GCGCTGATCG CCCTCTATCT GGAGGCGCGG
CTGAGCAAGG ACGAGATCCT GTCGCGCTAC CTGTCGTCGG TCTATTTCGG CGAGGGGGCG
TTCGGACTGC GCGCCGCGGC CCGGCACTAT TTCGACAAGA CGCCAGAGAC CCTGAGCATC
GGCGAGGCCG CCATGCTGGC CGGGATGGTC AAGGCCCCCT CCCGCCTGGC CCCCACCGAG
AACTTCGAGG GCGCGCGCGA GCGGATGCTG ACGGTGCTGG ACACCATGGT CGAGACCGGG
GTGATCACCC AGGCCCAGGC CCGCCAGGCG GCGCGCGACA TGCATCCCCA GCCGGCGCGC
GAAAAGCTGC CGACCGGGTC GTATTTCGCC GACTGGGTGT TCCCCCAGGC CCGCGCCGCC
CTCGAGCGCG GCTTTGGCGA GACGATCGTC AAGACCACGC TGGACACCCG CCTGCAGGCC
CAGGCCGAGA AGATCCTGAG CCGCGCCCTG GAGCGTGACG GCCAGGCCCT GCACGCCACC
CAGGGGGCGA TCGTGGCCAT GCGCACCGAC GGCCGCGTCG TGGCCATGGT CGGCGGCCGC
GACTACAAGA CCAGCCAGTT CAACCGCGCC GACGGCGAGC GCCAGCCGGG CAGCGCCTTC
AAGCTGTTCG TCTATCTGGC GGCCATGCGC CAGGGCATGA CCCCGACCAC CCCGATCCTC
GACGCGCCCA TCGACATCAG CGGCTACAGC CCCAAGAACC ACGAGGGCAA GTACGCGGGG
CGCGAGGTTC CGCTGATCAC CGCCTTCGCC GCCTCGTCCA ACGTGGCCGC CGTGCGCCTG
GCCAAGCAGG TCGGCCGCGA CGCCATCGTC AAGACCGCCC GTGATCTGGG CGTCACCGAG
CCGATCCCCC AGGACCTGAC CCTGGCCCTG GGCACCGGCC CGATGAGCCT GGTGCAACTG
ACCGCCGCCT ACGCCGCCAT CGCCGCCGGC GAGGCCCCGG TCGTGCCGCA CGGCCTGGCC
GACTGGCGCA AGCCCGCCCG GGTGCACAAG CTGTCCAAGG CCGAGCTGGC CAGCATGCGC
GACCTGCTGC GTTCGGCCGT GCATCGCGGC ACCGGCCTCG AGGCCGCCAT CCCCGGCGCG
TTCGGCAAGA CCGGCACCAC TCAAGGCTAC CGAGACGCCC TGTTCGTCGG CTATGTCGGC
GACCTGGTGA TCGGCGTCTG GGTCGGCAAC GACGACAACA GCGCCATGAA CGGCGTGGTC
GGCGGCGGCC TGCCGGCCAA GATCTGGAAG GCGTTCGCCA CCTACGCCAC GATCGGCGAC
CGCCCCGCCG CCCCAGAGGA TGACGCGACC ACCGCCGCCG AGGACCCGTT CCTGGGCGAT
GACCTGCTGG GTCCGGCCGA GGTCCCGGTC GAACCCGTCC CGGCGCCGGA AGGCGAACCC
GTCGATCCCG CCGCTCCGGT TCCACCAGCG GCGCCCGTGG TCGCCGCACC AGCGGCGGAA
GCTCCGCGCG CGCCGGGGCA GTAA
 
Protein sequence
MSDPADGPEN AEPEASPETE AALSKPKRVR KPRPKTAAAP EPKPSDLADG DAGLEAPSPE 
PSAEAEIEAV EAEVVADATP PAPPGVPFWK QKLWKQRPWQ IGAAAVVLAI VAVIGWLLWS
LPLGRALEPV ANPALVLVAT DGSPIARRGS YKEAPIEVAK LPAYVPGAFI SIEDRRFYTH
WGVDPKAIAR AMNANRKAGG VSEGGSTITQ QLAKNAFLNS DRNLRRKAQE ALIALYLEAR
LSKDEILSRY LSSVYFGEGA FGLRAAARHY FDKTPETLSI GEAAMLAGMV KAPSRLAPTE
NFEGARERML TVLDTMVETG VITQAQARQA ARDMHPQPAR EKLPTGSYFA DWVFPQARAA
LERGFGETIV KTTLDTRLQA QAEKILSRAL ERDGQALHAT QGAIVAMRTD GRVVAMVGGR
DYKTSQFNRA DGERQPGSAF KLFVYLAAMR QGMTPTTPIL DAPIDISGYS PKNHEGKYAG
REVPLITAFA ASSNVAAVRL AKQVGRDAIV KTARDLGVTE PIPQDLTLAL GTGPMSLVQL
TAAYAAIAAG EAPVVPHGLA DWRKPARVHK LSKAELASMR DLLRSAVHRG TGLEAAIPGA
FGKTGTTQGY RDALFVGYVG DLVIGVWVGN DDNSAMNGVV GGGLPAKIWK AFATYATIGD
RPAAPEDDAT TAAEDPFLGD DLLGPAEVPV EPVPAPEGEP VDPAAPVPPA APVVAAPAAE
APRAPGQ