| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_0228 |
|---|
| Symbol | |
|---|
| ID | 5897502 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010338 |
|---|
| Strand | + |
|---|
| Start bp | 245883 |
|---|
| End bp | 249257 |
|---|
| Gene Length | 3375 bp |
|---|
| Protein Length | 1124 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641560712 |
|---|
| Product | polysaccharide deacetylase |
|---|
| Protein accession | YP_001681863 |
|---|
| Protein GI | 167644200 |
|---|
| COG category | [G] Carbohydrate transport and metabolism
[M] Cell wall/membrane/envelope biogenesis
[R] General function prediction only |
|---|
| COG ID | [COG0726] Predicted xylanase/chitin deacetylase
[COG1215] Glycosyltransferases, probably involved in cell wall biogenesis
[COG3858] Predicted glycosyl hydrolase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 0.523895 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGCGGCG ACGACCGGCA TATCTTCCAC GATCCCACCG GACGGCGGGA TCGGAGGATG
CGGCTGATCC TGGGGATCGT CCTGTCGGCT CTGGCGGCGA TCGTCGCCGG CTTCCTGGCC
ACCCTGGCCT TCGCGCCCCG CCTGCCGTCG GTGACCCTGC GGGACCCCCA CGTGCTATCG
TCCCTGCACA AGGAGACGGC GCACCGCCTC AAGCCCGCCC TGGCCTGGCG CCAGGTCCCG
CGCCCGACAG CGGGCGCCCA AGGGACGGGA GGCGGCTCGG CCCAGGTGCG CCCGATCAGC
GTCGGCTTCT ATGTCAGCTG GGATGAGGAC TCCCGCGAGT CCCTGCGCCG CAACATCGAC
AAGCTGGACG TGGTCTCGCC CCAGTGGGTG GCGCTGAAGG GGCCGGCCGG CGACATCGTC
GTCGATGACG ACCCGCAGGG CGTGGCGCGC ATCGCCGCCG CCCCCAACCA TCCGGCCGTG
CTGCCCCTGG TCCACAACTC GGCCAACGCC GCGTTCAACG GCCCCCTGGC CGACGCCCTG
CTGGCCGATC CGAAAGCGCG CGCCAAGCTG ATCGCCAGCC TGGCCGACCT GGCCGTCAAG
CGCGGCTACG GCGGCTATGT CTTCGACCTG GAAAGCCTGT CGGCCAAGGG GCTGGTGAAC
TATCCCAAGC TGCTGGACGA GGCGCGCGCG GCGCTGAAGC CGCAGGGCCG CGAGGTCTGG
GTCACCGCGC CGTTCGACGA GGAGGGCTGG CCGCTCAAGC GCCTGCAGGA CTCGTCCGAC
ACCCTGGTGC TGATGGCCTA CGACCAGCAC TACGCCTTCG GCGATCCCGG TCCGAACGCC
GGCCAGGACT GGTACGAGAG CGAGCTGGCC AAGCGTTTCG CCAAGCTCGA TCCGGCCCGC
ACGATCATGG CCCTCGGCGC CTACGGCTAT GACTGGACGC TGAACAAGAA CGGCAAGCCC
GCCTCGGGCT CGCCGGCCAC CTTCCACGAG GCCATGCGCA ACGCCCAGGA CGCCGGCGCG
ACCATCGACA TGGACGACGA CGCCCTGAAC CCGACCTACG ACTATGTCGA CGATAACGGC
GACAGCCACG TGGTGTGGTT CCTCGACGCC ACCACCCTGT TCAACCAGGT CAAGGTCACC
GACGCGTGGA AGCCGCGCGG CTATGGCCTG TGGCGGATGG GCATGGAGGA CCCGGGCGTC
TGGAGCGTTC TGGGCAAACC CTATGGCCAA GCCTCGGCCG CCGGCCTGAC CCGCATCCCG
GCCGGCCAGA GCGTCGACTT CGACGGCGGC GGCGAGGTGC TGCACGTCTC GGCCCTGCCG
ACGCCCGGCA AGCGGATCCT GGAATTCGAC CCCGACACCG GGCTGATCTC CGACCAGACC
TACGCGGCGA TCCCCAGCTC CTACGTGATC GAGCGCTATG GCCAGAAACC GGGCCTGGTG
GCCCTGACCT TCGATGACGG CCCCGACGCG CGCTGGACGC CCAAGATTCT CGACGTTCTC
AAGGCCAAGA AGGCCCCGGC CACCTTCTTC GTGATCGGCG AGAACATGCA GGCCCGCCCC
GACCTGGTGA AACGCGAGGT CGCCGAAGGG CATGACGTCG GCAGCCACAC CTGGACCCAC
CCCAATATCG GCGAGACGCC CGTCGGCCAG ACCGACGTCG AGCTGAACGC CACCCAGCGC
CTGTTCGAGG TGATCACCGG TCGCTCGATG CGGCTGTTCC GCCCGCCGTT CTTCGGCGAC
GCCGAGCCCT CGACCCCGCA CGAGGTGGCG CCGCTGGTGA TCGCCCAGAC GCTGGGCTAC
CTGATCGTCG GCCTGCGGAT CGACCCCGAC GACTGGCAGA AGCCGCCGCC CCAGGCGATC
ATCGACCGCG CCCTCGAACG CCTCGACCAC CCCGGGGACC GGCCGGGCCA GGTGATCCTG
CTGCACGACG CAGGCGGCAA CCGCGCCAAC ACCGTCAAGG CCCTGCCGCA GCTGATCGAC
CAGATCCGGG CCCGCGGCTA TCGCCTGGTG ACCGTCGGCG AACTGGCCGG CATGACCCCG
ACCCAGACCA TGCCGGTCAG CGACCGCGAC CCCCTGGCCC TGGCCCTGGA CCGCATGGGC
TTTGGCCTGT TCCGGGGCGT GAAGGTGGCG CTGACCGCCC TGTTCCTGAC CGCCATCGCC
CTGGGCCTGG CGCGGCTGGT GTTCCTGGCC TGCCTGGCCC TGGTCCATCG CTGGACACAC
CAAAGCCCCG AGAATCTCGA TCCCGAGACC GGGCCGCTGG TCAGCGTGCT GATCCCCTGC
TTCAACGAGG AGAAGGTGAT CGCCGCCTCG GTGGCCCGGA TCCTGGAATC GGAGTGGAAG
AATCTCGAGG TCCTGGTCCT CGACGACGGC TCCAAGGACA ACACCGCGCA GGAGGTTCGC
CGCGCCCACG GCGACGATCC GCGCGTGACG CTGCTGAGCT TCGAGAACGG CGGCAAGGCG
CGGGCGGTCA ATCGCGGCCT GGCGATCGCC AAGGGCGACT ATGTCGTGGC CCTGGACGCC
GACACGCTTT TTCCGCCGAA GACCATTGGG CGCCTCATAC GCTGGTTTCA GGACCCGACG
ATCGGGGCGG TGGCCGGCAA CGCCATCGTC GGCAACCGGG TCAACATGGT CACCCGCTGG
CAGGCCCTGG AATATGTCAC GGCCCAGAAC CTGGAGCGCC GTGCGCTGGC GGCCCTGGGC
GCGGTGACCG TGGTGCCGGG CGCGGTCGGC GCCTGGCGCA AGAGCGTGCT GGACGCGCTG
GGCGGCTATC CGTCCGACAC CCTGGCGGAG GACCAGGACC TGACCATCGC CTGCCAGCGG
GCGGGCTGGA AGGTGGCCTT CGACCCCGCA GCCCAAGCCT TCACCGAGGC GCCCGACACG
GTGGGCGGCC TGCTCAAGCA ACGCTTCCGC TGGTCGTTCG GCACCCTGCA ATGCGTCTGG
AAGCACCGTG CGGCTTTGTT CAGCCCCAAG ACCCCGGCCC TGGGCTTCGT GGCCCTGCCG
CAGATCTGGC TGTTCCAGAT CCTGCTGGCC GTCGCCGCGC CGCTGGTCGA TCTGGCGGTG
GTCTGGAGCC TGATCTCCGG CGTCTACGGG GCCATCGCCC ATCCGGTCGA ATGGTCGCCC
GACGACACCA TCCAGGGACT GCTCTACTGG GCGGTGTTCA TCCTGGTCGA CCTGTCGGCC
GGCGCCCTGG GCATGGCCCT GGAGAAACGC GCGCCGTGGG CCGACCTGCC CTACCTGCCG
GTGCAGCGCT TCGGCTATCG CCAGCTGATG TACTACGTGG TGGTCAAGTC GGTGCTGACC
GCCGCGCGCG GCGGCCGGGT CGGCTGGGGC AAGCTGGAGC GGCGGGCGAC CGCGACGGTC
AAGTCCGGAG GGTGA
|
|---|
| Protein sequence | MGGDDRHIFH DPTGRRDRRM RLILGIVLSA LAAIVAGFLA TLAFAPRLPS VTLRDPHVLS
SLHKETAHRL KPALAWRQVP RPTAGAQGTG GGSAQVRPIS VGFYVSWDED SRESLRRNID
KLDVVSPQWV ALKGPAGDIV VDDDPQGVAR IAAAPNHPAV LPLVHNSANA AFNGPLADAL
LADPKARAKL IASLADLAVK RGYGGYVFDL ESLSAKGLVN YPKLLDEARA ALKPQGREVW
VTAPFDEEGW PLKRLQDSSD TLVLMAYDQH YAFGDPGPNA GQDWYESELA KRFAKLDPAR
TIMALGAYGY DWTLNKNGKP ASGSPATFHE AMRNAQDAGA TIDMDDDALN PTYDYVDDNG
DSHVVWFLDA TTLFNQVKVT DAWKPRGYGL WRMGMEDPGV WSVLGKPYGQ ASAAGLTRIP
AGQSVDFDGG GEVLHVSALP TPGKRILEFD PDTGLISDQT YAAIPSSYVI ERYGQKPGLV
ALTFDDGPDA RWTPKILDVL KAKKAPATFF VIGENMQARP DLVKREVAEG HDVGSHTWTH
PNIGETPVGQ TDVELNATQR LFEVITGRSM RLFRPPFFGD AEPSTPHEVA PLVIAQTLGY
LIVGLRIDPD DWQKPPPQAI IDRALERLDH PGDRPGQVIL LHDAGGNRAN TVKALPQLID
QIRARGYRLV TVGELAGMTP TQTMPVSDRD PLALALDRMG FGLFRGVKVA LTALFLTAIA
LGLARLVFLA CLALVHRWTH QSPENLDPET GPLVSVLIPC FNEEKVIAAS VARILESEWK
NLEVLVLDDG SKDNTAQEVR RAHGDDPRVT LLSFENGGKA RAVNRGLAIA KGDYVVALDA
DTLFPPKTIG RLIRWFQDPT IGAVAGNAIV GNRVNMVTRW QALEYVTAQN LERRALAALG
AVTVVPGAVG AWRKSVLDAL GGYPSDTLAE DQDLTIACQR AGWKVAFDPA AQAFTEAPDT
VGGLLKQRFR WSFGTLQCVW KHRAALFSPK TPALGFVALP QIWLFQILLA VAAPLVDLAV
VWSLISGVYG AIAHPVEWSP DDTIQGLLYW AVFILVDLSA GALGMALEKR APWADLPYLP
VQRFGYRQLM YYVVVKSVLT AARGGRVGWG KLERRATATV KSGG
|
|---|
| |