| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_5123 |
|---|
| Symbol | |
|---|
| ID | 5897397 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010335 |
|---|
| Strand | + |
|---|
| Start bp | 43042 |
|---|
| End bp | 44574 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641555226 |
|---|
| Product | RND efflux system outer membrane lipoprotein |
|---|
| Protein accession | YP_001676557 |
|---|
| Protein GI | 167621772 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 34 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCAGAC ACCAACCGCC CGCCGCGGCC TGGACTCTGA TCGCCTCCGG CGCGGTGTTC
CTGGCGGGAT GCAGCCTCTC GCCCGTCTAT CAGCGGCCGA CGACGTCGCT GTCGCCGGCC
TTCAAGGAGG CCCTCGACGC GCCGGCCGCG CCGCAAGGAT GGTCGCCCGC CGCGCCGTCC
GATCAGCACG AACGCGGGCC GTGGTGGCGA GTGTTTAATG ACGAGGTTCT CGACGCCCTG
GAAGCGCGCG CTTCGGGGGC CAATCAGGAC GTGGCCGCCG CCGCGGCCCG GGTCGAGCAG
GCGCGCGGGC TTCAGCGCGC GGCTTTGTCG GATCTCTTTC CAAGTGTCGA CGTGAGCCTG
GATGGCGCGC GCCGCAAGGA TGCGCCGGCG CTTCAGGGTC TTCCCCAGGA CACCCCCTCT
GCATCGCGCA CGCTTCTGCG GGCTCAGGCG GGCGCAACCT ATGAGGCCGA CCTGTTCGGT
CGCGCCCGCG CCGGCCTTTC GGCTGCGCGC GACGAGCGTC AACAGAGCCA GGCCTTGCTG
GCCGACGTCC AGCTGGCCGT TCAGGCCGAT GTCGCCCAGA CCTACTTCCT GCTCCGCGCC
TACGACGCCG AAATCGCGGT GCTGACCCAA ACCACCTCGC TGCGGCAGGA GGGCCTGGCC
TATCTGAGCC ACCGCTACGA GGAGGGCCAG ATCAGCGAAT TGGACCTGGC GCGCGCCCGC
ACGGAACTGG CGAGCGCCAA GGCCGACACC TTGTCGGTGC GGCGTCTTCG CGCCAGCGCC
GAGCATGGCT TGGCGATCCT CTTGGGCCAG GCGCCAGCCG ACCTGTCCCT GAGCCCCGCC
CCTCTTGTCG CGATCGACGT CCAGCCGCCG GCGGGACTGC CCTCAAGCCT GCTGGAACGA
CGCCCCGACA TCGCCGCCGC CGAACGGGCG ATGATGGCCG CCAACGCCCG TATCGGGGTC
GCCAGGAGCG CCTACTTTCC GACCCTGAGC TTGACCGCCG AAGGCGGCTT CGCCTCGGCC
GAGCTTGGCG ACCTCTTCAA GCACGGCGCG GCGGGATTCA TCGCTGGTCC TATCTTGTCG
CTGCCGCTGC TTGACGGGGG CCGACGCAAG GCTGGGGTGA TCCGGGCGCG GGGGCGGTAT
GACGAGACGC TCGCCCTATA CCGCCAACAG GTTCTGGTGG CCTTGCGCGA AACCGAAGAT
GGGCTGTCGG ATCTTCGCTA TCTGCGCGAC CAGACCAGAG CCCAGGCCGA GGCCGTCAGC
GCCTCGCGCC GCGGGGCCCA GATCGCCAGA TCGCAGTATC GAGAAGGGTC GGCCTCGTAC
CTAGACGTCA TCGACGCCGA GCGCACCGCG CTGCAAGCCC AGCGCGGCGC CATTCAGCTC
TCGGGCGTCC AGGCCGTTTC GACCGTCAAC CTGATCCGGG CCCTGGGCGG CGGCTGGCGC
GAGGCGTCCG CGCCCATAAG GCCAGGCCGC CAAGACGCCA ACCAACCGCT GAGAGCCGCG
CCGCTGAAGC GCGATCAAGG ATCTGCACCA TGA
|
|---|
| Protein sequence | MTRHQPPAAA WTLIASGAVF LAGCSLSPVY QRPTTSLSPA FKEALDAPAA PQGWSPAAPS
DQHERGPWWR VFNDEVLDAL EARASGANQD VAAAAARVEQ ARGLQRAALS DLFPSVDVSL
DGARRKDAPA LQGLPQDTPS ASRTLLRAQA GATYEADLFG RARAGLSAAR DERQQSQALL
ADVQLAVQAD VAQTYFLLRA YDAEIAVLTQ TTSLRQEGLA YLSHRYEEGQ ISELDLARAR
TELASAKADT LSVRRLRASA EHGLAILLGQ APADLSLSPA PLVAIDVQPP AGLPSSLLER
RPDIAAAERA MMAANARIGV ARSAYFPTLS LTAEGGFASA ELGDLFKHGA AGFIAGPILS
LPLLDGGRRK AGVIRARGRY DETLALYRQQ VLVALRETED GLSDLRYLRD QTRAQAEAVS
ASRRGAQIAR SQYREGSASY LDVIDAERTA LQAQRGAIQL SGVQAVSTVN LIRALGGGWR
EASAPIRPGR QDANQPLRAA PLKRDQGSAP
|
|---|
| |