| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_5404 |
|---|
| Symbol | |
|---|
| ID | 5897189 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010333 |
|---|
| Strand | - |
|---|
| Start bp | 120360 |
|---|
| End bp | 121334 |
|---|
| Gene Length | 975 bp |
|---|
| Protein Length | 324 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641550694 |
|---|
| Product | secretion protein HlyD family protein |
|---|
| Protein accession | YP_001672180 |
|---|
| Protein GI | 167621672 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 0.629231 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCCCG CATTGCCGCA GATGTCATTG CGGTTTCCAG CGAGGCTGGC CGGCCGGATT
GTTCAGCTCG ATGTCAAGGC CGGTGACCAA GTCAAAAGGG GTCAACTTCT GGTCAGTATA
GAACCCCGTG ACGCTCAATA CAGCTTGGCG GAGATCGACG CCAACATCGC CAATCTGCGC
GCGCAGCGCG CGCAGCTGTT GGCCCAGCAA AGCTTGGTGC GCAACACCGT CGGCAATCAG
GCTGGGGTGT CCTCCGCGAC CGTCGACAGC GCCCAGGCCG ACTATCTGAC CAGGCAGGCT
GAGCTGACCG TGGCAAGAGC CGCCTTTCAG CGCACCGAGA TCCTTTATGG GAAAGGGCTG
GTCGCCAAGA GCCGGTTCGA GGAGGATCAG GCGCGGCTTC GGGCCGCCGA GCAAACCGCC
GTCCGCGCCC GCGCCGCCAT CTCCGGCGCA AAGGCGGGCG CCGAGGTTAC CCAGACGGGC
CTCCAGCAGG TACAGGTGAT CGCCGAGCAG ATTGCGGGCG TCGACGCCCA GATCGATGCG
TTGGCTGCGC GGCGTGAGCA GCAACGGCTC GATCTCGGAC GGCGACAGAT CGCCGCGGCC
TTCAATGGGG TCATCGATCA GACCGTTGTC GATGCGGGCG AGTACGTCTC GCCGGGCTCG
CGGATCCTGC TCTATCACGA CCCGCATAGC GTCTGGGTCG ATGTGAACGT CAAGGAGACG
GAGTTCCGTA AACTGAGGGT TGGCGCGCCG GCCAAGGTGA AGGTTGACGC CTATCCCGGC
CGCACGTTCG CGGCGAGGGT TCAGCGCCTG GGGGGCGCCG CTACGAGCCA GTTCGCGCTA
CTGCCCAACC CCAATCCGAG CGGCAACTTC ACCAAGGTCA CCCAACGGCT GCCCGTGAGG
CTGGCCATCA TCCAACAGCA GAATCTCCTC CGGCCGGGGA TGATGGCCGA GGTCACGATC
GATGCCACAG ACTGA
|
|---|
| Protein sequence | MTPALPQMSL RFPARLAGRI VQLDVKAGDQ VKRGQLLVSI EPRDAQYSLA EIDANIANLR
AQRAQLLAQQ SLVRNTVGNQ AGVSSATVDS AQADYLTRQA ELTVARAAFQ RTEILYGKGL
VAKSRFEEDQ ARLRAAEQTA VRARAAISGA KAGAEVTQTG LQQVQVIAEQ IAGVDAQIDA
LAARREQQRL DLGRRQIAAA FNGVIDQTVV DAGEYVSPGS RILLYHDPHS VWVDVNVKET
EFRKLRVGAP AKVKVDAYPG RTFAARVQRL GGAATSQFAL LPNPNPSGNF TKVTQRLPVR
LAIIQQQNLL RPGMMAEVTI DATD
|
|---|
| |