| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Caul_5369 |
|---|
| Symbol | |
|---|
| ID | 5897242 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Caulobacter sp. K31 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010333 |
|---|
| Strand | - |
|---|
| Start bp | 79969 |
|---|
| End bp | 80652 |
|---|
| Gene Length | 684 bp |
|---|
| Protein Length | 227 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641550661 |
|---|
| Product | conjugal transfer protein TrbF |
|---|
| Protein accession | YP_001672147 |
|---|
| Protein GI | 167621639 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG3701] Type IV secretory pathway, TrbF components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.682768 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.410714 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCCCT TCAATCGCCC AAATGATCGA TACGGCAGCT CGGCTCCGGT CGAGAGCCCC
TACCTGCGGG CTTCCAGGGA ATGGGACAAC CGGATCGGCT CCGCCGTCGT CCAGGCCAAG
AACTGGCGCA TGGCCGCCTT CGGCTGCATG GGCCTGGCCG CGCTGGCGCT GGGCGGCTTC
ATCTATGAGG CGAGCAACAC CAACATCGCC ACCTATGTCG TGCCGATCGA CAACTACGCC
CGGCCCGGCC GCATCGAGCT GGCCGGCCGG ACCTACCAGC CCACAACGGC GGAGATCGGC
TACTTCCTGG CCGACTGGGT GCGGCGCACC CGCTCCAAGA GCATCGATCC CATCGTCATC
CGCGACAATT GGACCGGCGC CTACCACTTC GTCGCCGGCC CGGCGATCGG CCAGCTCAAT
ACCTACGCCA AGGCCAACGA TCCGTTCGCC AATGTTGGCG CCCAGGCTAT CAATGTCGAG
ATCGTCTCGG TCCTGGCCCG CAGTCCCAGC ACCTACCAGG TGCAGTGGCG CGAGACGCAG
TTCAACGCCG GAACGTCCGG CGTGACCGAG AACTGGACCG GGCTCTTAAC CGCCAAGATC
AACCCCCCGA AAAACGAGGC CGAGCTGCGC GCCAACCCGC TGGGCATCTT CATCACCGCA
TTTCAGTGGA GTCGCGAGCT ATGA
|
|---|
| Protein sequence | MNPFNRPNDR YGSSAPVESP YLRASREWDN RIGSAVVQAK NWRMAAFGCM GLAALALGGF
IYEASNTNIA TYVVPIDNYA RPGRIELAGR TYQPTTAEIG YFLADWVRRT RSKSIDPIVI
RDNWTGAYHF VAGPAIGQLN TYAKANDPFA NVGAQAINVE IVSVLARSPS TYQVQWRETQ
FNAGTSGVTE NWTGLLTAKI NPPKNEAELR ANPLGIFITA FQWSREL
|
|---|
| |