Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Caul_5335 |
Symbol | |
ID | 5897162 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Caulobacter sp. K31 |
Kingdom | Bacteria |
Replicon accession | NC_010333 |
Strand | - |
Start bp | 45469 |
End bp | 46008 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641550627 |
Product | conjugal transfer protein TraF |
Protein accession | YP_001672113 |
Protein GI | 167621605 |
COG category | [O] Posttranslational modification, protein turnover, chaperones [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4959] Type IV secretory pathway, protease TraF |
TIGRFAM ID | [TIGR02771] conjugative transfer signal peptidase TraF |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.490398 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATCCATG GCCTTGTGAG ACGCAGGCTC CTGGTTATCG CGGCGGCATT GGCTCCGGCC GTGCTGCTGG GCGCCCTGGC CCTGGTCGTT CAGGGCCCGT CGCTGCTGTG GAATCGCTCG GATAGTGAGC CCAGGGGCCT CTACATTCGC AGCGCTGCGG CTCCAAGCCG GGGCCAGATC ATCGCGTTCC CAGCCCCGCC CTCGGTCCTG ACCTACGCCA GCGGTCGCAT GGCCTATATG CGCCATATGC CGATCCTAAA GGAGGTCGCG GCGATGTCGG GAGACACCGT CTGCACCCTC GACGGCAAGC TGGTGATCAA CGGCGTGTGG CGCGCGCCCG TGCTCGCCCA TGACGGCGAG AGCCGGCCGC TACCGCACTG GCGCGCCTGC CGCCGTCTGG GCGAGGGCGA GTTCTTTGTG TTCTCCAACC GCATCCCCAA CAGCTTCGAC AGCCGGTACT ACGGACCGGT TCGGCACGAG GCGATCGTCG GCGTCTTCCG CCCGATCATG ACCCAGGCCG ACCGCCCAGG TGACGTCTGA
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Protein sequence | MIHGLVRRRL LVIAAALAPA VLLGALALVV QGPSLLWNRS DSEPRGLYIR SAAAPSRGQI IAFPAPPSVL TYASGRMAYM RHMPILKEVA AMSGDTVCTL DGKLVINGVW RAPVLAHDGE SRPLPHWRAC RRLGEGEFFV FSNRIPNSFD SRYYGPVRHE AIVGVFRPIM TQADRPGDV
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