Gene Caul_5335 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagCaul_5335 
Symbol 
ID5897162 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameCaulobacter sp. K31 
KingdomBacteria 
Replicon accessionNC_010333 
Strand
Start bp45469 
End bp46008 
Gene Length540 bp 
Protein Length179 aa 
Translation table11 
GC content67% 
IMG OID641550627 
Productconjugal transfer protein TraF 
Protein accessionYP_001672113 
Protein GI167621605 
COG category[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG4959] Type IV secretory pathway, protease TraF 
TIGRFAM ID[TIGR02771] conjugative transfer signal peptidase TraF 


Plasmid Coverage information

Num covering plasmid clones20 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.490398 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCCATG GCCTTGTGAG ACGCAGGCTC CTGGTTATCG CGGCGGCATT GGCTCCGGCC 
GTGCTGCTGG GCGCCCTGGC CCTGGTCGTT CAGGGCCCGT CGCTGCTGTG GAATCGCTCG
GATAGTGAGC CCAGGGGCCT CTACATTCGC AGCGCTGCGG CTCCAAGCCG GGGCCAGATC
ATCGCGTTCC CAGCCCCGCC CTCGGTCCTG ACCTACGCCA GCGGTCGCAT GGCCTATATG
CGCCATATGC CGATCCTAAA GGAGGTCGCG GCGATGTCGG GAGACACCGT CTGCACCCTC
GACGGCAAGC TGGTGATCAA CGGCGTGTGG CGCGCGCCCG TGCTCGCCCA TGACGGCGAG
AGCCGGCCGC TACCGCACTG GCGCGCCTGC CGCCGTCTGG GCGAGGGCGA GTTCTTTGTG
TTCTCCAACC GCATCCCCAA CAGCTTCGAC AGCCGGTACT ACGGACCGGT TCGGCACGAG
GCGATCGTCG GCGTCTTCCG CCCGATCATG ACCCAGGCCG ACCGCCCAGG TGACGTCTGA
 
Protein sequence
MIHGLVRRRL LVIAAALAPA VLLGALALVV QGPSLLWNRS DSEPRGLYIR SAAAPSRGQI 
IAFPAPPSVL TYASGRMAYM RHMPILKEVA AMSGDTVCTL DGKLVINGVW RAPVLAHDGE
SRPLPHWRAC RRLGEGEFFV FSNRIPNSFD SRYYGPVRHE AIVGVFRPIM TQADRPGDV