Gene PputGB1_5444 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_5444 
Symbol 
ID5873259 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp6076511 
End bp6078193 
Gene Length1683 bp 
Protein Length560 aa 
Translation table11 
GC content59% 
IMG OID641550580 
Productputative inner membrane protein translocase component YidC 
Protein accessionYP_001671661 
Protein GI167036430 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0706] Preprotein translocase subunit YidC 
TIGRFAM ID[TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones35 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones47 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATATTA AACGCACGAT CCTGATCGCC GCGCTGGCAG TCGTGTCCTA CGTCATGGTC 
CTGAAGTGGA ACGATGACTA CGGCCAGGCT GCCCTGCCGA CTCAGAATAC TGCTGCCAGC
ACTGTTGCTC CGGGCTTGCC CGATGGCGTG CCGGCCGGTA ACAACGGTGC CAGCGCCGAT
GTACCGAGCG CCAACGCCGA ATCGAGCCCT GCCGAACTGG CACCGGTCGC ACTCAGCAAG
GACCTGATCC GAGTCAAGAC CGACGTTCTG GAACTGGCTA TCGATCCGGT CGGTGGTGAC
ATCGTCCAGT TGAACCTGCC GAAGTACCCA CGCCGTCAAG ACCACCCGGA CATTCCGTTC
CAGTTGTTCG ACAACGGTGG TGAGCGTGTT TACCTGGCAC AAAGCGGCCT GACCGGCGCC
AACGGCCCGG ATGCCCGCGC CAGCGGTCGC CCGCTGTATG CCGCCGAGCA GAAGAGCTAC
CAGCTGGCCG ACGGCCAGGA ACAACTGGTG GTCGACCTGA AGTTCAGCGA CAACGGTGTC
AACTACATCA AGCGCTTCAG CTTCAAGCGC GGTGAGTACG ACCTGAATGT CAGCTACCTG
ATCGACAACC AGAGCGGCCA GGCCTGGAGC GGCAACATGT TTGCCCAGCT CAAGCGTGAC
GCCAGCGGCG ATCCTTCTTC CAGCACCGCC ACCGGTACTG CGACCTACCT GGGTGCAGCC
CTGTGGACAG CTTCCGAGCC TTACAAAAAG GTCTCGATGA AGGACATCGA CAAAGGTGGT
TTGAAAGAAA ATGTGTCCGG CGGCTGGGTT GCCTGGCTGC AGCACTACTT CGTCACCGCC
TGGATTCCGG CCAAGTCGGA CAACAACGTT GTTCAGACCC GCAAGGACAG CCAGGGTAAC
TACATCATTG GCTACACCGG CCCCGTAATC AGCGTGCCTG CTGGCGGCAA GGTCGAAACC
AGCGCCATGC TGTACGCCGG CCCGAAGATT CAGTCCAAGC TGAAAGAGTT GTCCCCAGGC
CTGGAACTGA CCGTCGACTA CGGCTTCCTG TGGTTCATCG CCCAACCGAT CTTCTGGCTG
CTGCAACATA TCCACAGCCT CCTGGGTAAC TGGGGCTGGT CGATCATCGT GCTGACCATG
CTGATCAAAG GCCTGTTCTT CCCTCTGTCG GCTGCCAGCT ACCGCTCCAT GGCCCGTATG
CGTGCCGTTG CACCTAAGCT CGCCGCCCTG AAGGAACGCT TCGGTGACGA TCGCCAGAAG
ATGTCCCAGG CGATGATGGA GCTGTACAAG AAAGAGAAGA TCAACCCGCT GGGCGGCTGC
CTGCCGATCC TGGTACAGAT GCCGGTCTTC CTGGCCTTGT ACTGGGTACT GCTGGAAAGC
GTGGAAATGC GCCAGGCTCC GTGGATGCTG TGGATTACCG ACCTGTCGAT CAAGGATCCG
TTCTTCATCC TGCCGATCAT CATGGGCGCC ACCATGTTCA TCCAGCAGCG CCTGAACCCG
ACGCCGCCGG ATCCGATGCA GGCCAAGGTG ATGAAAATGA TGCCGATCAT CTTCACCTTC
TTCTTCCTGT GGTTCCCGGC CGGTCTGGTG CTGTACTGGG TTGTGAACAA CTGCCTGTCG
ATTTCGCAGC AGTGGTACAT CACTCGCCGT ATCGAAGCAG CTACCAAAAA AGCTGCTGCT
TGA
 
Protein sequence
MDIKRTILIA ALAVVSYVMV LKWNDDYGQA ALPTQNTAAS TVAPGLPDGV PAGNNGASAD 
VPSANAESSP AELAPVALSK DLIRVKTDVL ELAIDPVGGD IVQLNLPKYP RRQDHPDIPF
QLFDNGGERV YLAQSGLTGA NGPDARASGR PLYAAEQKSY QLADGQEQLV VDLKFSDNGV
NYIKRFSFKR GEYDLNVSYL IDNQSGQAWS GNMFAQLKRD ASGDPSSSTA TGTATYLGAA
LWTASEPYKK VSMKDIDKGG LKENVSGGWV AWLQHYFVTA WIPAKSDNNV VQTRKDSQGN
YIIGYTGPVI SVPAGGKVET SAMLYAGPKI QSKLKELSPG LELTVDYGFL WFIAQPIFWL
LQHIHSLLGN WGWSIIVLTM LIKGLFFPLS AASYRSMARM RAVAPKLAAL KERFGDDRQK
MSQAMMELYK KEKINPLGGC LPILVQMPVF LALYWVLLES VEMRQAPWML WITDLSIKDP
FFILPIIMGA TMFIQQRLNP TPPDPMQAKV MKMMPIIFTF FFLWFPAGLV LYWVVNNCLS
ISQQWYITRR IEAATKKAAA