| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5401 |
|---|
| Symbol | uvrD |
|---|
| ID | 5873216 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 6029764 |
|---|
| End bp | 6031950 |
|---|
| Gene Length | 2187 bp |
|---|
| Protein Length | 728 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 641550537 |
|---|
| Product | DNA-dependent helicase II |
|---|
| Protein accession | YP_001671618 |
|---|
| Protein GI | 167036387 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0210] Superfamily I DNA and RNA helicases |
|---|
| TIGRFAM ID | [TIGR01075] DNA helicase II |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 0.0541595 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACACAG ATGACCTCTC CCTCCTGCTT AATTCCCTCA ACGATGCCCA ACGCCAGGCC
GTAGCGGCCA CGCTCGGGCG TCAATTGGTG CTTGCCGGCG CCGGTTCCGG TAAAACCCGC
GTGCTGGTGC ACCGCATCGC CTGGCTTATC CAGGTAGAGC AGGCGTCGCC GCATTCGATC
CTGTCGGTGA CCTTCACCAA CAAGGCTGCT GCAGAAATGC GCCAGCGGAT CGAGCAACTG
CTGGGGATCA ACCCGGCGGG TATGTGGGTA GGCACCTTCC ACGGCCTGGC CCATCGCCTG
CTGCGGGCCC ACTGGCAGGA AGCACGGTTG GTTCAGAACT TCCAGATCCT CGACAGCGAC
GACCAGCAAC GCCTGATCAA GCGGGTAATG CGTGAGCTGG GCCTGGACGA GCAGAAGTGG
CCGGCACGCC AGGCCCAGTG GTTCATCAAC GGGCAGAAGG ACGAGGGCCT GCGCCCGCAG
CATATCCAGG CCGGTGGCGA CCTGTTCCTG GCGACCATGC GCGAGGTCTA TACCGCCTAC
GAGCAGGCCT GCGAGCGCGC CGGGGTCATC GACTTCTCCG AGCTGCTGCT GCGCGCCCTG
GACCTGTGGC GCGACCACCC GGGCCTGTTG GAGCACTACC AGCGGCGCTT CCAGCACGTG
CTGGTGGACG AGTTCCAGGA TACCAACGCC GTGCAGTACG CCTGGCTGCG CCTGTTGGCG
CGCGGTGGCG CCAGCTTGAT GGCCGTAGGC GATGACGACC AGTCGATCTA CGGCTGGCGC
GGCGCCAAGA TCGAAAACAT TCACCAGTAC ACCGCCGACT TCCCCGACGC CGAGATGATC
CGCCTGGAGC AGAACTACCG CTCCACCGGC GGCATCCTCA AGGCTGCCAA CGCCCTGATC
GCCAACAACA GTGGGCGCCT GGGCAAAGAG CTGTGGACCG ACATGGGCGA AGGCGAACCG
CTGACCCTGT ACGCGGCCTA CAACGAACAT GACGAAGCGC GCTACGTGGT AGAAACCATC
GAAAGCCTGG TCAAGCAGGG CAATGCGCGT AACGAGATCG CCATTCTGTA CCGTTCCAAC
GCCCAGTCGC GGGTGCTGGA AGAGGCCCTG CTGCGCGAGC GCATCCCCTA CCGCATCTAT
GGCGGCCAAC GCTTCTTCGA ACGCGCCGAA ATCAAGAACG CCATGGCATA CCTGCGGCTG
ATCGAAGGGC GTGGCAACGA TGCCGCCCTG GAGCGGGTGA TCAACGTGCC GCCGCGCGGT
ATTGGCGAAA AAACCGTCGA AGCCATCCGT GAACACGCCC GTCACAGCCA GCTGTCGATG
TGGGAAGCCA TGTGCCAGCT GCTCGCCGCC AAGGCCCTGA AGGGCCGCGC CGCCAGTGCC
CTGGGGGCTT TCATCGAGCT GATCGAGGGG CTGGCCGCCA AAGTCGTGGA CATGCCGCTG
CATACCATGA CCCAGACCAC CATCGAGCAG TCCGGGCTGA TCCTCTATCA CCAGGAGGAA
AAAGGTGAAA AGGGCCAGGC ACGGGTAGAA AACCTTGAGG AACTGGTCAG CGCTGCACGC
AACTTCGAAT CCGCCGACGA AGATGCCGAC CTCTCGCCAC TGTCAGCCTT CTTGGGGCAT
GCCTCGCTTG AAGCGGGCGA TACCCAGGCT GATGAGCATG AAGACAGCAT CCAGCTGATG
ACCCTGCACA GCGCCAAAGG CCTGGAGTTC CCGTATGTGT TCCTGGTGGG CATGGAAGAA
GGCCTGTTCC CGCACAAGAT GAGCCTGGAA GAACCCGGCC GCCTGGAAGA GGAACGGCGC
CTGGCCTACG TGGGCATCAC CCGCGCCATG CGCCAGCTGG TCATGACCTA TGCCGAAACC
CGTCGCCTGT ATGGCAGCGA GACCTACAAC AAGGTGTCGC GTTTCGTGCG CGAAATTCCG
CCAGGCTTGG TTCAGGAAGT GCGCCTGTCC AACAGCGTCA GCCGCCCGTT CGGTGGGGCC
AAGACCGCCA CCAACAGCAA CCTGTTTGCC AATGCCAGTA TTCCGCAGAC CGCGTTCAAC
CTTGGCCAGC GTGTACAACA TGCAGTGTTT GGCGAAGGTG TGATCCTCAA CTTCGAGGGC
TCGGGTGCGC AGGCGCGGGT GCAGGTGAAC TTTGCCGAAG GCAGCAAGTG GCTGATGCTG
GGGTATGCCA AGCTCGAGGC CATCTGA
|
|---|
| Protein sequence | MHTDDLSLLL NSLNDAQRQA VAATLGRQLV LAGAGSGKTR VLVHRIAWLI QVEQASPHSI
LSVTFTNKAA AEMRQRIEQL LGINPAGMWV GTFHGLAHRL LRAHWQEARL VQNFQILDSD
DQQRLIKRVM RELGLDEQKW PARQAQWFIN GQKDEGLRPQ HIQAGGDLFL ATMREVYTAY
EQACERAGVI DFSELLLRAL DLWRDHPGLL EHYQRRFQHV LVDEFQDTNA VQYAWLRLLA
RGGASLMAVG DDDQSIYGWR GAKIENIHQY TADFPDAEMI RLEQNYRSTG GILKAANALI
ANNSGRLGKE LWTDMGEGEP LTLYAAYNEH DEARYVVETI ESLVKQGNAR NEIAILYRSN
AQSRVLEEAL LRERIPYRIY GGQRFFERAE IKNAMAYLRL IEGRGNDAAL ERVINVPPRG
IGEKTVEAIR EHARHSQLSM WEAMCQLLAA KALKGRAASA LGAFIELIEG LAAKVVDMPL
HTMTQTTIEQ SGLILYHQEE KGEKGQARVE NLEELVSAAR NFESADEDAD LSPLSAFLGH
ASLEAGDTQA DEHEDSIQLM TLHSAKGLEF PYVFLVGMEE GLFPHKMSLE EPGRLEEERR
LAYVGITRAM RQLVMTYAET RRLYGSETYN KVSRFVREIP PGLVQEVRLS NSVSRPFGGA
KTATNSNLFA NASIPQTAFN LGQRVQHAVF GEGVILNFEG SGAQARVQVN FAEGSKWLML
GYAKLEAI
|
|---|
| |