| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5377 |
|---|
| Symbol | |
|---|
| ID | 5873192 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 6002472 |
|---|
| End bp | 6003989 |
|---|
| Gene Length | 1518 bp |
|---|
| Protein Length | 505 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 641550513 |
|---|
| Product | S-type pyocin domain-containing protein |
|---|
| Protein accession | YP_001671594 |
|---|
| Protein GI | 167036363 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 32 |
|---|
| Fosmid unclonability p-value | 0.496303 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGCTTG AAAGTCGACT GCAAGATCAC GACGAGCAAA GTTTCTTATC GCTAGTCACT
ACGCTATGGA ACGTTGAGAC TCAGAGGTCT GAGCACAACG CTCTCATCGA TCATTTCGAC
CAGATAGTCG GCCACCCCGC CGGTAGTGAC CTTTTGTTCT ACTCAAACGC CGATGCCGTC
GGCGCTATAA ACTCGCCAGA GCATATCGTT GCAACAATCA AATCGTGGCA CCAGAGAAAT
GGCCTTCCGG CCTTCAAGGG GCAGCATTTA CAGCCGTCAA GAGCGCTTCG AAGCATGGCG
AGCGAACAGC GTGCCAGCCA GTCTTCCACT CGCAACCTGG AGAAAGTGCG CAAGTTGGTG
GCGCAGGTTC ATGCCGCTGA GCAGCAGGCA ACGCTGCAGC TTGCTGCACT TGAGCAACAG
CTAACCATTG ACCCAGTGGC CAGCACGCCG GAACAGCAAC TGGCTTTCAG CCTTGCTACG
CTGCGTGCTC TGGAATCCAT TCAGCACCAA GCTGCGCAGG CAGTGTTTCA ACTTGAGCGG
TTGCACATGT CGGTCAAGTT CGCACTCGAC GCTGCCGTGC GTGATGCTAC CAGCCCCTTC
CTGGACGCAG CGATTCAGGC CGTGGCGCTG CAAGAAATGA ATGCCGGTAG CCAGCGTCAT
GCTGCGGCCT TGGCCATGGC GCAAGGGCGT CATTCCGTGT TGTACGCTCG CGGTGTGACA
CTGATAGAAC ATCTGGAAGC ACGTATTGCC CAGTTGGCCA AAGCGACCGG GGCTGGCCCA
GGGCATGGGC CTTTGACGTT GGTAGCGGCA GCTGATGCCT CAAACCTGCA CCCGGCATTG
CTGATGTCGC AGGGCTTGAA CGGTGACGTT GCCCAACAGC AACGCCATCT GATCAAGACC
GTGCGCTCGG CGGTGGCAGA GCTGGAGTGG CAGGCGACCT CCTTGCAAGG TGACCACCCC
GGTACGTATG CGGATTTAAT CGAGTTTGTG CAGGGAACCC CAAGCGATGA CCCGCGTTTC
GGGCTGACGG TGCCACTTGC TGAAATACTC GACGAAGATC GGCAGGATTG GGCCGATCTG
GCCGCTGAAC GGGCAGAGGT GGATCTGCCC ATGCGTCTGT GCTCGATGGT GCGTGGTGCC
CGCTCCGGCA GCACCAAAGG TGTAAAACCC TTTACCCGTT ACTGTCATGT GCTGATGACC
TCGACGCAGG GCCCCATCGT GCCTTCGCGC GTGCGGGTGC GGGAAGCTGG TTGGGATGCG
GGTCGGCGGG CTTTCGCATT CACTAGCGAG ACCGGGGCGC CTGTTACCGT TCTGTGGCAG
AAGGGCAGCG CGCCCTATCC GCCGATAGAC ATCTCCCGGC CGCCGAGCAT TAGCTATCTG
CACATGCCCA ATGTGCCTAT CATAGAGCGC TTCATGGACC TGACGCAGGT TCAATTCGAT
GACTACATCG TGGTGTTTCC GCCGCAGGCT GGGCTGGCAC CGGTATACGT CATGTTCAGG
GATCGCCGCG AGCTTTAG
|
|---|
| Protein sequence | MKLESRLQDH DEQSFLSLVT TLWNVETQRS EHNALIDHFD QIVGHPAGSD LLFYSNADAV
GAINSPEHIV ATIKSWHQRN GLPAFKGQHL QPSRALRSMA SEQRASQSST RNLEKVRKLV
AQVHAAEQQA TLQLAALEQQ LTIDPVASTP EQQLAFSLAT LRALESIQHQ AAQAVFQLER
LHMSVKFALD AAVRDATSPF LDAAIQAVAL QEMNAGSQRH AAALAMAQGR HSVLYARGVT
LIEHLEARIA QLAKATGAGP GHGPLTLVAA ADASNLHPAL LMSQGLNGDV AQQQRHLIKT
VRSAVAELEW QATSLQGDHP GTYADLIEFV QGTPSDDPRF GLTVPLAEIL DEDRQDWADL
AAERAEVDLP MRLCSMVRGA RSGSTKGVKP FTRYCHVLMT STQGPIVPSR VRVREAGWDA
GRRAFAFTSE TGAPVTVLWQ KGSAPYPPID ISRPPSISYL HMPNVPIIER FMDLTQVQFD
DYIVVFPPQA GLAPVYVMFR DRREL
|
|---|
| |