Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5356 |
Symbol | |
ID | 5873171 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5979866 |
End bp | 5980597 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641550492 |
Product | TonB family protein |
Protein accession | YP_001671573 |
Protein GI | 167036342 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
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Plasmid Coverage information |
Num covering plasmid clones | 31 |
Plasmid unclonability p-value | 0.772268 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 35 |
Fosmid unclonability p-value | 0.884832 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGAAAA CGCGCTCGAA CATGGCGCGC TACGGTGGCA GCCTGGCGAT CGTGCTGGGC GTGCACGTGG TCGCCGTGCT GCTGACGCTC AACTGGTCGG TGCCCCAGGC CATCGAACTG CCCCCGGCAG CGATGATGGT CGAACTGGCA CCGCTACCGG AGCCTGCGCC ACCACCACCA CCGAAAGCGG CTCCACAGCC ACCGGCACCG GTCGAAGAAC TGCCATTGCC GAAGCTGGTG GAAGCGCCCA AGCCCAAGAT CGCCGTCCAC AAGCCGCCCA AGCCGAAGGC CAAGCCACAG CCGCCCAAGC CCGAGAAAAA GCCTGAGCCG CCGAAGGAAG CGCCGCCAAC CGAGCAAACG GTAGACGCAC CGCCCAGCAA CACGCCACCG CAGAAGTCCG CGGCACCGGC ACCGAGCATT GCGTCCAACA GCAACGCCCT GCCCACCTGG CAGAGCGACC TGCTGCGCCA CCTGGCCAAA TACAAGCGTT ACCCGGAAGA CGCGCGCCGT CGCGGCCTGC AAGGCATCAA CCGCCTGCGC TTCGTGGTCG ACGCCGAAGG CAAGGTGGTG TCGTACTCCA TGGCCGGTGG TTCGGGCAGC GCCGCACTGG ACCGGGCGAC CCTGGAAATG ATCCGTCGGG CCGGCACGGT ACCCAAGCCG CCACCCGAGT TGCTGAACAA TGGCACGATC GAAGTCGTGG CACCGTTCGT CTACTCACTG GACCGCCGCT GA
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Protein sequence | MTKTRSNMAR YGGSLAIVLG VHVVAVLLTL NWSVPQAIEL PPAAMMVELA PLPEPAPPPP PKAAPQPPAP VEELPLPKLV EAPKPKIAVH KPPKPKAKPQ PPKPEKKPEP PKEAPPTEQT VDAPPSNTPP QKSAAPAPSI ASNSNALPTW QSDLLRHLAK YKRYPEDARR RGLQGINRLR FVVDAEGKVV SYSMAGGSGS AALDRATLEM IRRAGTVPKP PPELLNNGTI EVVAPFVYSL DRR
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