Gene PputGB1_5334 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_5334 
Symbol 
ID5873149 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5957690 
End bp5959297 
Gene Length1608 bp 
Protein Length535 aa 
Translation table11 
GC content65% 
IMG OID641550470 
Productextracellular solute-binding protein 
Protein accessionYP_001671551 
Protein GI167036320 
COG category[E] Amino acid transport and metabolism 
COG ID[COG0747] ABC-type dipeptide transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value0.00805263 
Fosmid HitchhikerYes 
Fosmid clonabilityhitchhiker 
 

Sequence

Gene sequence
ATGCGTGCTG CCGCCCTTTC CTTATTGTTC AACTCTCTGT TCGCCGCCGG CGCTCTGTTC 
GCTGCCGGCG CAGCTCAGGC CGCGCCGCTG AGCGTTTGCA GCGAAGCCAG CCCCGAAGGC
TTCGACGTGG TGCAGTACAA CTCGCTGACC ACGACCAACG CCACGGCTGA CGTGCTGATG
AACCGCCTGG TGGAGTTCGA CGCGGCGCAA GGCAAGGTGG TGCCAAGCCT GGCGGCCAGT
TGGACAGTAT CGGCCGACGG CCTGGTGTAT GACTTCACCC TGCGCGACGG CGTGAAGTTC
CACAGCACCG CCTACTTCAA GCCAAGCCGC GAGCTGAACG CCGACGATGT GTTGTTCAGC
TTCCAGCGCA TGCTCTACCC GGCACACGCG TGGCACAAGA CGGCACCGGG CGGCTACCCG
CATGCTCAGT CGCTGCAGTT GGGCAGCCTG ATCAAGGCGA TCGAGGCACC TGCACCGAAC
GCCGTGCGCT TCACCCTCAG CCACCCGGAC GCTACCTTCC TGGCCACCCT GAGCATGGGC
TTCGCCTCGA TCTACTCCGC CGAGTATGCC GACAAGCTGC TCAAGGCCGG CACGCCCGAG
AAGCTCAACA GCCAGCCGAT CGGCACCGGG CCGTTCGTAT TCCAGCGCTT CCAGAAGGAC
GCCGTGGTGC GCTACCGCGC CAACCCGGAC TACTTCGCCG GCAAGCCGGC GGTCGACCCG
CTGATCTTCG CCATTACCAC CGATGCCAAT GTGCGCCTGC AGAAGCTCAA GCGGGGCGAG
TGCCAGGTTG CCTTGTCGCC CAAGCCGCTG GACATTGCCG AAGCAGGCAA GGACAGCAAC
CTCAAGGTAG CCACGACGCC GGCGTTCATG ACCGCCTTCG TCGCCATCAA CAGCCAGCAC
CCACCGCTGG ACAAGCCAGA AGTGCGCCAG GCCATCAACC TGGCCTTCGA CAAGCAGGCT
TACCTCAAAG CCGTGTTCGA AGACTCCGCA GTGGCCGCCA ACGGCCCCTA CCCGCCCAAC
ACCTGGAGCT ACGCCAAGGA CCTGCCCGGC TACCCGCTGG ACCTGAAGAA AGCCAAGGCG
CTGCTGGCCA AAGCCGGCTT GGCCGAAGGC TTCAGCACCA CCATCTGGAC CCGCCCGTCG
GGCAGCCTGC TCAACCCCAA CCCCAGCCTT GGCGCCCAGA TGCTGCAAGC CGACCTGACC
AAGATCGGCA TCAAGGCCGA GATTCGCGTG ATCGAATGGG GCGAGCTGAT CCGCCGCGCC
AAGGCCGGCG AGCATGACTT GCTGTTCATG GGCTGGGCAG GCGACAACGG TGACCCGGAC
AACTTCCTCA GCCCGCAGTT TTCCTGCGCG GCGGTCGAGT CGGGCACCAA CTTTGCCCGC
TTCTGCGACA ACCGCCTGGA CCAGCTGATC AGCGCCGGGC GCACCACCAA CGACCAAAGT
GTGCGCAGCC GGCTTTACCA GCAGGCGCAG ACGCTGATTC AGCAGCAGGC GCTGTGGGTG
CCACTTGCGC ACCCGACGGC GGCGACCTTG CTGCGCCAGG AGGTCGAGGG GTATCAGGTG
AGCCCGTTCG GGCGACTGGA TTTCAGCAAG GTGTCGGTGA CCAAGTAA
 
Protein sequence
MRAAALSLLF NSLFAAGALF AAGAAQAAPL SVCSEASPEG FDVVQYNSLT TTNATADVLM 
NRLVEFDAAQ GKVVPSLAAS WTVSADGLVY DFTLRDGVKF HSTAYFKPSR ELNADDVLFS
FQRMLYPAHA WHKTAPGGYP HAQSLQLGSL IKAIEAPAPN AVRFTLSHPD ATFLATLSMG
FASIYSAEYA DKLLKAGTPE KLNSQPIGTG PFVFQRFQKD AVVRYRANPD YFAGKPAVDP
LIFAITTDAN VRLQKLKRGE CQVALSPKPL DIAEAGKDSN LKVATTPAFM TAFVAINSQH
PPLDKPEVRQ AINLAFDKQA YLKAVFEDSA VAANGPYPPN TWSYAKDLPG YPLDLKKAKA
LLAKAGLAEG FSTTIWTRPS GSLLNPNPSL GAQMLQADLT KIGIKAEIRV IEWGELIRRA
KAGEHDLLFM GWAGDNGDPD NFLSPQFSCA AVESGTNFAR FCDNRLDQLI SAGRTTNDQS
VRSRLYQQAQ TLIQQQALWV PLAHPTAATL LRQEVEGYQV SPFGRLDFSK VSVTK