| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5315 |
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| Symbol | |
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| ID | 5873130 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5936980 |
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| End bp | 5938644 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 641550451 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001671532 |
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| Protein GI | 167036301 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 31 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 27 |
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| Fosmid unclonability p-value | 0.146003 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGTCCACGC CTGTCGAACC TTTGCGTTTG CTGCTGTTGG CCGATGAGCC GGAATGGGCC
GCCGTGTTGC GCGCGTGCAT GCCTGCACTG GGCGGCAGCG CCGTACTGTT GACCGCGCCG
AACTGGGAGG CGATCGACAG CCTGTTCAGC CATGATCGCC ATGCCGTCGT GTTGGCGACG
CCAGCCTTGC AGCCCGCTCC CGGGCGTTGC GAGCTGCCGA CCATCCTGCT GCTCGACCAT
GAGCCCGAGG CACCGCCCAG CGCCGTCAGC GACTGGCTGG TGCGCGACCA GCTCAATGCC
GATGGCCTGC GCCGCTCACT GCGCCATGTG CGTGAGCGCA GCGTGCTGGT GGCCACCTTG
CAGCGCCTGG CCGAGCAGGA CCCGCTGACC GGCATCGCCA ACCGCCAGGG CTTCCAGGCT
TTGCTCAACG CACGCCTGGC CGAAAACGAA GGCCGTGGCG TTGCGCTTGG CCACCTGGAC
CTGGACAACT TCCGCCACGT CAATGACGCC CTTGGTCACC AGAGTGGTGA TCGCCTGATC
CTGCAGGTAG TGGCACGACT GAAACATCAG CTGGAGGCGG GTGACCAGCT GGCACGTCTG
GGTAGCGACG AGTTCGCCTT GTTGATCGAC ACCCGCCGCG ACGCCAATCG CGCCGAATGG
ATTGCCGAAC GCATCGTCGA GGCCTTGGCC GAACCCTACT GGATCGACGG CGAAAGCCTG
CTGCTGGGCT GCAGCCTGGG CCTGGCCCAT GCTCGCGCGC AGAGCGGGGC CGATCCGCTG
ATGTGGCACG CGCATATCGC CATGCGTCAG GCCAAGGGCA GCCAGGGCTG CACCTTCCAT
GTGTTCAACG AACGTATCAA CCGCAACGCC CGCAGCCTTG CCGACCTGGA AAGCGAACTG
CGCCGTGCCC TGCGCCGCGA CGAGCTGGAG CTGCACTATC AGCCGCGGAT GAACCTGGCA
GACGGGCGCA TCGTCGGCCT GGAAGCGCTG GTGCGCTGGC GCCATGCCGA GCGCGGGCTG
CTGCCACCCA GCGAGTTCGT GCCACTGGCC GAGCAGAGCG GCCTGATCGT GCCCTTGGGT
TACTGGGTGA TTTCCCGCGC CCTGCGCGAT ATGCAGGCCC TGTGCGAGCG CGGCCTGGAG
CCGTTGCACA TGGCGGTAAA CCTGAGTTTC CGCCAGTTCC AGGACAGCCA GTTGTTGGCC
ACCTTGAGCC GGTTGATCCT TGAGCACGGT GTGGATGCCC GCTGGCTGGA GTTCGAACTG
ACCGAAACGG CGGTGATGCG TCGTAACGAG CTGGTGCGCC AGACCATGGA CGCGCTGGGG
CGCCTGGGTG TGCGCTTTTC GCTCGATGAT TTCGGCACCG GGTTTTCTTC GTTCGTGCAC
CTCAACAGCC TGCCGATCAC CTTGCTCAAG GTGGACCGCA GCTTCGTTGC GGAAATGGAA
ATGCGTGAAG AGAACCGCAA GCTGGTGCAC GCCATGATCA ACCTGGCGCA CAACCTCAAC
CTCGAGGTGG TGGCCGAGGG GGTGGAGCGT GAAGAGCAGT TGGCGCTGTT GCGCGGGTTT
GGGTGTGACC AGGTGCAGGG CTTCTTGGTC AGCAAGCCAT TGCCGGTCGG GGAGTTGATC
GAGTTCTTGC TGGATTGCAG CAGGCCGAAG CTGGTTAGCC TGTGA
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| Protein sequence | MSTPVEPLRL LLLADEPEWA AVLRACMPAL GGSAVLLTAP NWEAIDSLFS HDRHAVVLAT
PALQPAPGRC ELPTILLLDH EPEAPPSAVS DWLVRDQLNA DGLRRSLRHV RERSVLVATL
QRLAEQDPLT GIANRQGFQA LLNARLAENE GRGVALGHLD LDNFRHVNDA LGHQSGDRLI
LQVVARLKHQ LEAGDQLARL GSDEFALLID TRRDANRAEW IAERIVEALA EPYWIDGESL
LLGCSLGLAH ARAQSGADPL MWHAHIAMRQ AKGSQGCTFH VFNERINRNA RSLADLESEL
RRALRRDELE LHYQPRMNLA DGRIVGLEAL VRWRHAERGL LPPSEFVPLA EQSGLIVPLG
YWVISRALRD MQALCERGLE PLHMAVNLSF RQFQDSQLLA TLSRLILEHG VDARWLEFEL
TETAVMRRNE LVRQTMDALG RLGVRFSLDD FGTGFSSFVH LNSLPITLLK VDRSFVAEME
MREENRKLVH AMINLAHNLN LEVVAEGVER EEQLALLRGF GCDQVQGFLV SKPLPVGELI
EFLLDCSRPK LVSL
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