Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5288 |
Symbol | |
ID | 5873103 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5907248 |
End bp | 5908495 |
Gene Length | 1248 bp |
Protein Length | 415 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 641550424 |
Product | diaminopimelate decarboxylase |
Protein accession | YP_001671505 |
Protein GI | 167036274 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0019] Diaminopimelate decarboxylase |
TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
Num covering plasmid clones | 37 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 44 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCTT TCAACTACCG CGACGGTGAG CTGTTCGCGG AAGGCGTGGC CCTGTCGGCC ATCGCCGAGC GCTACGGCAC CCCCACCTAC GTGTATTCGC GCGCCCACAT CGAGGCCCAG TACCGTAGCT ACGCCGATGC CCTGCAAGGC ACTGAACACT TGGTGTGCTT CGCGGTAAAG GCCAACTCCA ACCTGGGCGT ACTGAATGTA CTGGCGCGCC TGGGCGCAGG TTTCGACATT GTCTCCGGCG GTGAGCTGGA GCGCGTGCTG GCCGCTGGCG GGCGCGCAGA CCGCGTGGTC TTCTCCGGCG TCGGTAAAAC CCGTGAAGAC ATGCGCCGCG CCCTGGAAGT TGGCGTGCAC TGCTTCAACG TCGAATCCAC CGACGAACTG GAGCGCCTGC AAGTAGTGGC CGCTGAAATG GGCAAGGTTG CCCCGGTGTC GCTGCGCGTC AACCCGGACG TCGATGCCGG TACCCACCCT TACATCTCCA CAGGCCTCAA AGAAAACAAG TTCGGCATCG CCATCGCCGA CGCCGAGGCC ATCTACGTGC GTGCCGCACA GCTGCCGAAC CTGGAAGTGG TCGGTGTCGA CTGCCACATT GGCTCGCAGC TGACCACCGT GGAGCCGTTC CTCGACGCAC TCGACCGCCT GCTGGTACTG GTCGACCGCC TGGCCGAATG CGGTATCCAC CTGCGCCACC TGGACTTGGG CGGCGGTGTT GGCGTTCGCT ACCGCGACGA ACAGCCGCCG CTGGTGGCCG ACTACATCAA AGCCATCCGC GAGCGCGTGG GCGAGCGCGA CCTGGCCCTG GTGTTCGAGC CGGGCCGCTA CATCGTGGCC AACGCTGGCG TGCTGCTGAC CCGTGTGGAA TACCTCAAGC ACACCGAACA CAAGGACTTC GCCATCATCG ATGCGGCGAT GAACGACCTG ATTCGGCCGG CCCTGTATCA AGCCTGGATG GGTGTCAGCG CGGTCAAGCC TCGTGCGGGC GAAGGCCGTG CCTACGACCT GGTCGGCCCT ATCTGCGAGA CCGGCGACTT CCTTGGCAAG GACCGCGTGC TGAACCTGGC CGAAGGTGAC TTGCTGGCCG TAGCGTCTGC GGGCGCCTAT GGTTTTGTCA TGAGTTCCAA CTACAACACC CGTGGCCGTT GCGCTGAAAT CCTGGTCGAC GGCGACCAGG CGTTCGAAGT ACGCCGCCGC GAGACCATCG CCGAACTGTA CGCTGGCGAA AGCCTGCTGC CGGAGTAA
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Protein sequence | MNAFNYRDGE LFAEGVALSA IAERYGTPTY VYSRAHIEAQ YRSYADALQG TEHLVCFAVK ANSNLGVLNV LARLGAGFDI VSGGELERVL AAGGRADRVV FSGVGKTRED MRRALEVGVH CFNVESTDEL ERLQVVAAEM GKVAPVSLRV NPDVDAGTHP YISTGLKENK FGIAIADAEA IYVRAAQLPN LEVVGVDCHI GSQLTTVEPF LDALDRLLVL VDRLAECGIH LRHLDLGGGV GVRYRDEQPP LVADYIKAIR ERVGERDLAL VFEPGRYIVA NAGVLLTRVE YLKHTEHKDF AIIDAAMNDL IRPALYQAWM GVSAVKPRAG EGRAYDLVGP ICETGDFLGK DRVLNLAEGD LLAVASAGAY GFVMSSNYNT RGRCAEILVD GDQAFEVRRR ETIAELYAGE SLLPE
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