| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5275 |
|---|
| Symbol | rho |
|---|
| ID | 5873090 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 5893475 |
|---|
| End bp | 5894734 |
|---|
| Gene Length | 1260 bp |
|---|
| Protein Length | 419 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 641550412 |
|---|
| Product | transcription termination factor Rho |
|---|
| Protein accession | YP_001671493 |
|---|
| Protein GI | 167036262 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1158] Transcription termination factor |
|---|
| TIGRFAM ID | [TIGR00767] transcription termination factor Rho |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 40 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 50 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACCTGA CTGAACTCAA GCAAAAGCCG ATTACCGATC TTTTGGAAAT GGCCGAACAG
ATGGGCATCG AAAACATGGC CCGTTCGCGC AAACAGGACG TGATTTTCGC CCTGCTGAAG
AAGCATGCGA AAAGCGGCGA AGAGATCTCG GGTGACGGCG TGCTGGAGAT TCTCCAGGAT
GGTTTCGGTT TCCTGCGTTC GGCTGATGCG TCCTACCTGG CCGGCCCAGA CGATATCTAC
GTCTCGCCCA GCCAGATCCG CCGTTTCAAC CTGCGTACCG GCGACACCAT CGTCGGCAAG
ATCCGCCCAC CGAAGGAAGG GGAGCGTTAC TTCGCCCTGC TGAAGGTCGA TACCATCAAC
TTCGACCGCC CGGAAAACGC GAAGAACAAG ATCCTGTTCG AAAACCTGAC GCCGCTGTTC
CCGAACAAGC GCTTGAAGAT GGAGGCCGGC AACGGCTCCA CCGAAGACTT GACCGGCCGT
GTCATCGACC TGTGCGCCCC GATCGGCAAA GGCCAGCGCG GCCTGATCGT TGCCCCGCCA
AAAGCGGGCA AGACGATCAT GCTGCAGAAC ATCGCGGCCA ACATCACCCG TAACAATCCC
GAGTGCCACC TGATCGTCCT GCTGATCGAC GAGCGCCCGG AAGAAGTGAC CGAAATGCAG
CGCACCGTGC GCGGCGAAGT GGTTGCTTCC ACCTTCGACG AGCCGCCAAC CCGCCACGTG
CAGGTTGCCG AAATGGTGAT CGAGAAGGCC AAGCGCCTGG TCGAGCACAA GAAGGACGTG
GTCATTCTGC TGGACTCCAT CACCCGTCTG GCGCGTGCCT ACAACACCGT GATCCCGAGC
TCCGGCAAGG TGCTGACCGG TGGTGTCGAT GCCCACGCCC TGGAGAAGCC GAAGCGTTTC
TTCGGTGCTG CGCGTAACAT CGAGGAAGGC GGCTCGCTGA CCATCATCGC CACCGCGCTG
GTCGAAACCG GCTCGAAGAT GGACGAAGTG ATCTACGAAG AGTTCAAGGG CACCGGCAAT
ATGGAGCTGC CGCTGGACCG CCGCATCGCC GAGAAGCGTG TGTTCCCGGC CATCAACATC
AACCGCTCCG GTACCCGCCG CGAAGAGTTG CTGACTGCCG ACGACGAACT GCAGCGCATG
TGGATCCTGC GCAAGCTGCT GCACCCGATG GACGAAATCG CCGCCATCGA GTTCTTGGTC
GACAAGCTCA AGCAGACCAA GACCAACGAC GAGTTCTTCC TGTCGATGAA GCGCAAGTAA
|
|---|
| Protein sequence | MNLTELKQKP ITDLLEMAEQ MGIENMARSR KQDVIFALLK KHAKSGEEIS GDGVLEILQD
GFGFLRSADA SYLAGPDDIY VSPSQIRRFN LRTGDTIVGK IRPPKEGERY FALLKVDTIN
FDRPENAKNK ILFENLTPLF PNKRLKMEAG NGSTEDLTGR VIDLCAPIGK GQRGLIVAPP
KAGKTIMLQN IAANITRNNP ECHLIVLLID ERPEEVTEMQ RTVRGEVVAS TFDEPPTRHV
QVAEMVIEKA KRLVEHKKDV VILLDSITRL ARAYNTVIPS SGKVLTGGVD AHALEKPKRF
FGAARNIEEG GSLTIIATAL VETGSKMDEV IYEEFKGTGN MELPLDRRIA EKRVFPAINI
NRSGTRREEL LTADDELQRM WILRKLLHPM DEIAAIEFLV DKLKQTKTND EFFLSMKRK
|
|---|
| |