Gene PputGB1_5269 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_5269 
Symbol 
ID5873084 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5887221 
End bp5888333 
Gene Length1113 bp 
Protein Length370 aa 
Translation table11 
GC content64% 
IMG OID641550406 
ProductABC-2 type transporter 
Protein accessionYP_001671487 
Protein GI167036256 
COG category[V] Defense mechanisms 
COG ID[COG0842] ABC-type multidrug transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value0.139137 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones53 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCGCGCC TGAACCACAC CCTGCGCCTA GGCCTGAAAG AACTGACCAG CCTGCGTCAT 
GACAGCGTAC TGCTGCTGTT CCTGCTGTAT GCCTTCAGCG TGGCGATCTA CATGCCGGCC
GCCGGCTCGG TGATCGGTGT GCACAACGCC AGCGTCGCGG TGGTGGACGA AGACCACAGC
CTGCTCTCGC GCAAGCTCAG TGAAGCCCTG CAACCACCGG AGTTTCAACC TGCCGTTCCG
CTGACCGCGC AACACCTGGA CCAGGCCATG GACAGCGGCC AGTACACCTT CGTGATCAAC
GTACCGGTGA ATTTCCAGAG TGACCTGCTG GCCGGGCGCT CGCCGGAGCT GCAGATAAAC
GTCGATGCCA CGGCCATGAG CCAGGCGTTC ATGGGCGCCG GCTACATCGG CCGCATCTTC
GAGCGCGAGC TGCTCGACTA CAGCCAGCGG GGCAACGTGC AAAGCCCGGT GCTGATCAAC
CCCAAGGCGC TGTTCAACCC CAACCTGGAG GGCGGTTGGT TCCTGGCGGT GATCCAGATC
GTCAACAACA TCACCATCCT GGCAATCATC CTCACCGGCA CCGCGCTGCT GCGCGAGCGT
GAGCACGGCA CCCTCGACCA CCTGCTGGTG CTGCCACTGA CCGCGCTGGA GATCATGCTG
GCCAAGATCG GCAGCAACGC CCTGGTGGTG GTGATATGCA CCTGGATTTC GTTGGTGGTG
GTAGTGAAAG GCGCGCTGGG CGTGCCGTTG TCCGGCTCGA TGGGGTTGTT CCTGGCCGTG
ACCGCGCTGT ACCTGTTCGC CAGTACGGCG CTGGGTATCT TCCTCGCCAC CCTGGCACGC
TCGACGCCGC AGTTCGGCCT GCTGGCGATC CCGGTGATCA TCCCGATGCT GTTGCTGTCC
GGCGGCAGCA CACCGCTGGA CAGCATGCCG CAGTGGCTGC AGTGGGTGAT GCAGGGGTCG
CCGTCGACGC ATTTCGTCAG CCTGGGGGCC GCGATCCTGT TCCGCGATGC CGGGTGGGCG
GTGGTGTGGC CGGATATCCT GGCACTGGCG CTGATCGGCC TGGTATTTTT CAGCGTGGCG
CTTTCGCGGT TCCGTCGCAG CCTGGCGTCC TGA
 
Protein sequence
MSRLNHTLRL GLKELTSLRH DSVLLLFLLY AFSVAIYMPA AGSVIGVHNA SVAVVDEDHS 
LLSRKLSEAL QPPEFQPAVP LTAQHLDQAM DSGQYTFVIN VPVNFQSDLL AGRSPELQIN
VDATAMSQAF MGAGYIGRIF ERELLDYSQR GNVQSPVLIN PKALFNPNLE GGWFLAVIQI
VNNITILAII LTGTALLRER EHGTLDHLLV LPLTALEIML AKIGSNALVV VICTWISLVV
VVKGALGVPL SGSMGLFLAV TALYLFASTA LGIFLATLAR STPQFGLLAI PVIIPMLLLS
GGSTPLDSMP QWLQWVMQGS PSTHFVSLGA AILFRDAGWA VVWPDILALA LIGLVFFSVA
LSRFRRSLAS