| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5268 |
|---|
| Symbol | |
|---|
| ID | 5873083 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5884499 |
|---|
| End bp | 5887219 |
|---|
| Gene Length | 2721 bp |
|---|
| Protein Length | 906 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641550405 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_001671486 |
|---|
| Protein GI | 167036255 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1131] ABC-type multidrug transport system, ATPase component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.155488 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCC CGGCACTGCT GGCCGATGGC ATCAGCCACC GCTACGGCGA CCTGACGGCC
CTGCATACCC TGGGTTTCAG CCTGCCTGCG GGCACCCGCT GCGCGCTGAT TGGCCCAGAT
GGCGCCGGCA AGTCCACTCT GCTGGGGTTG ATCGCCGGCG TCAAACGCCT GCAGCAGGGT
GAACTGCAGG TTCTGGGCGG CTCGATCCGC CAACGGCGCC ATCGCGCAGC GCTGTACCCG
AAAGTGGCAT TCATGCCGCA GGGACTAGGC AACAACCTGT ACCCAGAGCT GTCGATCAGC
GAGAACATCC GCTTTTTCGC CACGCTGTTC GGCCTGGGCC GCCGCGAATG CGAGCAGCGC
ATGGCCAACT TGCTGCAGGC CACCGACCTG CAGCGCTTTG CCGAGCGCCC GGCCGGCAAG
CTGTCGGGCG GCATGAAGCA GAAGCTGGGC TTGTGCTGCG CGCTGATCCA CGAACCAGAC
CTGCTGATCC TCGACGAGCC GACCACCGGC GTCGACCCGC TGTCGCGGCG GCGTTTCTGG
GAACTGGTCG AACAGGTTCG CGCGCAGCGC CCGCAACTGA CCCTGCTGGT GGCCACCGCC
TACATGGAAG AAGCCGAACA GTTCGAGCAT TGCCTGATGC TCGATGGCGG CCGCCTGCTG
GCCGCAGGCG CCAGCCACGA ACTGGCCGCA GTCACCCCCA GTGGCAAACT GGACGACGCC
TTCACCCACT ACCAGGGCGC GGGCAAGGCG CAGCATCAAC CCCTGAGCAT TCCACCGCGC
CAGGCCACGG ATGGCCCGGT CGCCATCGAG GCGCACGACC TGACCCTGCG CTTTGGCGAC
TTCACAGCGG TGAACAAGGT CAGTTTCGCC ATTGGCCGTG GGGAGATCTT CGGCTTCCTC
GGCTCCAACG GCTGCGGCAA GACCACCACC ATGAAAGTGC TCACCGGCCT GATGCCTGCC
AGCGAGGGCA GCGCCAGCCT GCTGGGGCGC CCGGTGGATG CCAGTGACCT GGCCACGCGC
AAGCGGGTCG GCTTCATGTC ACAGAGCTTC TCGCTGTATG GCGAGCTCAG CACCCGGCAG
AACCTGGCCC TCCATGCCCG CCTGTTCGAC TTGCCCAAAG CCCAGAGCGC CCAGCGCATC
GATGAGCTGA TAAATCGCTT CGACCTCGCC GCCATCGCCG ACCAACCGTC TGGCGCACTG
CCCCTTGGCC TGCGCCAGCG CCTGTCGCTG GCCGTGGCGG TGTTGCATCG CCCTGAAGTG
CTGATCCTCG ACGAACCGAC TTCCGGCGTC GACCCGGCCG CCCGCGACGA CTTCTGGCGC
CTGCTGGTAG AGCTGTCCCG CGAGCAAGGC GTGACCATTT TCCTCTCCAC CCACTTCATG
AACGAAGCCC AGCGCTGCGA CCGTATTTCG CTGATGCACG CCGGGCGGGT ACTGGCCTGC
GACACGCCGG AGGCCTTGCA GCGCCAGTAC CAGGGCGAAA CCCTGGAGGA CGCTTTCGTG
CGGTGCCTGG AACAAGCCCA GGAGCTCGCG CCGCAAACCA CGGATAACAC CGTACTGGAG
CAAGCAGCTT CGCCTGCCCC ACCACTGCGC CAAGGCTTCA GCCTGCGCCG CCTGCTGGCG
GTGGCCAGCC GAGAAGGCAA GGAACTGCTG CGCGACAAGG TACGCCTGGC CTTCGCCTTG
CTGGGTGCAC TGTTCATGAT GGTGATTTTC GGCTACGGCA TTTCACTGGA TGTAGAAAAC
CTTGCCTTCG CCGTGCACGA CCAGGATCAA AGCCCGCAAA GCCGCGCCTA CCTCGAAGCC
TTCCGAGGCT CACGCTATTT CGCCGAACAG GCGCCGATCC GCGACAGCCG CGAACTGCAT
CAGCGGCTGC AGCGCTCGGA AATCAAACTG GCACTGGAGA TTCCGCCCGG TTTTGGCCGC
GACCTGTACG CCGGGCGTCA ACCGGTGGTG GCCGCCTGGC TCGACGGCGG CATGCCGTTC
CGCGCCGAAA CCAGCCGCAA CTACGTGGAA GCCGTGCACC AGGCCAACCT GGAGCAACTG
GCCAAGGCCA GCCCACAGCC GCAGCCGCGC CAGGACCTGG TGCGCCTGGA AACGCGTTTT
CGCTACAACC AGGACGTGGT CAGCGTGAAT GCCATCGGCC CGGGCGTGAT GGCGCTGATC
CTGGCCTTCA TACCGGCCAT GCTCACTGCA CTGGGCATCG TTCGCGAGAA GGAGCTGGGC
TCCATCACCA ACTTCTACGC CACACCCCTC ACCCGCCTGG AGTTCCTGCT GGGCAAGCAG
ATGCCCTACC TGGCGGTAAG CCTGGTCAAC CTGGCGCTGC TGGTGGCGAT GAACCGCTGG
CTGTTCGCCG TGCCGCTCAA GGGCAGTGTG CTGGCCCTGG CCTGTGGTGG CGTGGCCTAC
CTGCTGGCCA CCACCAGCCT GGGCCTGCTG ATTTCAGCAT TCACCCGCAC CCAGATCGCC
GCCATTCTCG GCACCATGAT CATTACCAGC CTGCCGACCA TCCAGTTTTC CGGGCTGATC
GTGCCACGCT CGTCGCTGGA CGGCGCGGCG GCGGTGATGG GCCAGCTGTT CCCGGCGGGC
TACTTCCTCG ACATCGCGGT CGGCACCTTC ACCAAGGCGC TGGGCCTGCG CGAGCTGTGG
CCGCAGTGCC TGATCCTGTT GGGCTTCTTT GCCGCATTCA CCGGCCTGAG CCTGGCCATG
CTGAAGAAGC AGGAGGCCTG A
|
|---|
| Protein sequence | MNAPALLADG ISHRYGDLTA LHTLGFSLPA GTRCALIGPD GAGKSTLLGL IAGVKRLQQG
ELQVLGGSIR QRRHRAALYP KVAFMPQGLG NNLYPELSIS ENIRFFATLF GLGRRECEQR
MANLLQATDL QRFAERPAGK LSGGMKQKLG LCCALIHEPD LLILDEPTTG VDPLSRRRFW
ELVEQVRAQR PQLTLLVATA YMEEAEQFEH CLMLDGGRLL AAGASHELAA VTPSGKLDDA
FTHYQGAGKA QHQPLSIPPR QATDGPVAIE AHDLTLRFGD FTAVNKVSFA IGRGEIFGFL
GSNGCGKTTT MKVLTGLMPA SEGSASLLGR PVDASDLATR KRVGFMSQSF SLYGELSTRQ
NLALHARLFD LPKAQSAQRI DELINRFDLA AIADQPSGAL PLGLRQRLSL AVAVLHRPEV
LILDEPTSGV DPAARDDFWR LLVELSREQG VTIFLSTHFM NEAQRCDRIS LMHAGRVLAC
DTPEALQRQY QGETLEDAFV RCLEQAQELA PQTTDNTVLE QAASPAPPLR QGFSLRRLLA
VASREGKELL RDKVRLAFAL LGALFMMVIF GYGISLDVEN LAFAVHDQDQ SPQSRAYLEA
FRGSRYFAEQ APIRDSRELH QRLQRSEIKL ALEIPPGFGR DLYAGRQPVV AAWLDGGMPF
RAETSRNYVE AVHQANLEQL AKASPQPQPR QDLVRLETRF RYNQDVVSVN AIGPGVMALI
LAFIPAMLTA LGIVREKELG SITNFYATPL TRLEFLLGKQ MPYLAVSLVN LALLVAMNRW
LFAVPLKGSV LALACGGVAY LLATTSLGLL ISAFTRTQIA AILGTMIITS LPTIQFSGLI
VPRSSLDGAA AVMGQLFPAG YFLDIAVGTF TKALGLRELW PQCLILLGFF AAFTGLSLAM
LKKQEA
|
|---|
| |