Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5240 |
Symbol | |
ID | 5873054 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5853856 |
End bp | 5854950 |
Gene Length | 1095 bp |
Protein Length | 364 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 641550376 |
Product | extracellular solute-binding protein |
Protein accession | YP_001671458 |
Protein GI | 167036227 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0687] Spermidine/putrescine-binding periplasmic protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 36 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 45 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | TTGTCTATTT CTGTATTCCG CAAGGCCTTG ATGGCCGGCG CGGGCCTGAC GCTGGCATGC AGCGTCCAAG CGGCGCCAAC GGTGCATCTC TATAACTGGT CCGACTACAT CGGCCCGACC ACACTCGCGG ACTTCGAGAA AGCCACGGGC ATCAAGCCCG TGCAGGACGT GTTCGACTCC AACGAAACCC TGGAAGGCAA ACTGCTGGCC GGTAACACCG GCTATGACGT AGTGGTGCCG TCCAACCATT TCCTCGGCAA GCAGATCAAG GCGGGCGCGT TCCAGAAGCT CGACAAGAAC CTGCTGCCCA ATTATGCCAA CCTCGACCCG GCGTTGATGA AGCGCCTGGA AAAGAACGAT CCAGGCAACC AGTACGCCGT GCCTTACCTG TGGGGCACCA ACGGCATCGG TTACAACGTC GACAAGGTGA AGGCCGCGCT GGGCGTGGAC ACCATCGACT CCTGGGCCGT CTTGTTCGAG CCCGAGAACA TGAAGAAGCT CGCCAAGTGC GGTGTGGCCT TCCTCGACTC GGCGGACGAA ATGCTCCCGG CGGTGCTCAA CTACATGGGC CTCGACCCCA ACAGCACCGA CCCCAAGGAT TACGCCAAGG CCGAGCAGAA GCTGCTGGCG GTGCGCCCGT ACGTGACCTA CTTCCACTCG TCCAAGTACA TCACCGACCT GGCCAACGGC GACATTTGCG TCGCGGCAGG GTTCTCGGGT GATGTGTTCC AGGCCAAGGC CCGAGCTGAA GAAGCGAAGA AGGGCGTGAA CCTGGCCTAC GCCATTCCCA AGGAAGGCGG CAACCTCTGG TTCGACGTGC TGGCGATCCC CAAGGACGCC AAGAACGTCA AAGAGGCGCA TGCCTTCATC AACTATTTGC TGAAACCTGA GGTTATCGCC CAGGTCAGCG ATTACGTCGG TTACGCCAAC CCGAACCCCA AGGCTGGCGA CCTGATGGAC CAGGCCGTGA GGACCGACGC TGCGGTTTAC CCACCGCAGG ATGTGCTGGA CAAGATGTTC GTGAATTCAG AGTTGCCGCC CAAGGTGCAA CGTTTGATGA CCCGTAGCTG GACCAAGGTC AAGTCGGGCA AGTAA
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Protein sequence | MSISVFRKAL MAGAGLTLAC SVQAAPTVHL YNWSDYIGPT TLADFEKATG IKPVQDVFDS NETLEGKLLA GNTGYDVVVP SNHFLGKQIK AGAFQKLDKN LLPNYANLDP ALMKRLEKND PGNQYAVPYL WGTNGIGYNV DKVKAALGVD TIDSWAVLFE PENMKKLAKC GVAFLDSADE MLPAVLNYMG LDPNSTDPKD YAKAEQKLLA VRPYVTYFHS SKYITDLANG DICVAAGFSG DVFQAKARAE EAKKGVNLAY AIPKEGGNLW FDVLAIPKDA KNVKEAHAFI NYLLKPEVIA QVSDYVGYAN PNPKAGDLMD QAVRTDAAVY PPQDVLDKMF VNSELPPKVQ RLMTRSWTKV KSGK
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