| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5227 |
|---|
| Symbol | |
|---|
| ID | 5873041 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 5839249 |
|---|
| End bp | 5840049 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 641550363 |
|---|
| Product | TonB family protein |
|---|
| Protein accession | YP_001671445 |
|---|
| Protein GI | 167036214 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0810] Periplasmic protein TonB, links inner and outer membranes |
|---|
| TIGRFAM ID | [TIGR01352] TonB family C-terminal domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 0.631844 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 46 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGGTAATG TCCAATCGGC CGTCAGGGCC TACGACCAGC CATGGCGCCC GGCCCCAGGC
GACCTGGTCG AGCTTGGACG CACGCTTCGC CTGCCGCTTG GCCAGCTGCG CCTGCAACGC
ACGCCTGTGA GCGGGCTCAA GCGCCGCGAC AAGCTGGTGT TGGGCCTGCT GGTGCTGGCC
CTGCATGGCG CCGCCGCGTA CTGGGTCAGC CAGGCGCCCA CGCCCGAACT GCCGGTTGTG
CCGCCACAGG TGCCGCCCAT GACCATCGAG TTCGCGGCAC CCGCACCGCC TGTGGTCGAG
CCTCCGCCGC CTGCGCCCGC GCCTCCCGTG GTCGAGCCAC CGCCGCCGCC ACCGGTCGTC
GACGAACTGG CCGCCAAGCC CAAACCCAAA CCGAAGCCCG TGCCAAAGCC TGTGGTCAAG
CAAGCGCCCA AGCCACAGCC CAAGCCGGTT GAAGCACCAC CACCCGCGCC AGTGGCGGCC
CCGGCACCGC CTGCGCCCGC ACCACCCGCG CCGGCCCCGA TAACCCCGGC ATCGGCCAAC
GCCGCGTACC TGAAGAACCC GGCGCCGGAG TACCCGCAGA TGGCTCAGCG CCGTGGCTGG
GAGGGCACCG TGCTGTTGCG TGTCGAAGTG CTGCCCAGCG GCAAGCCTGG GCAGATCCAG
GTTCAGAAGA GCAGCGGCCG TGACGCCCTC GACGCCGCCG CGCTGGCCGC GGTGAAGCGC
TGGAGCTTCG TGCCCGCCAA GCAGGGTGAT GTGGCCCAGA CCGGCTGGGT CAGCGTGCCG
ATCGATTTCA AGCTTCGCTA A
|
|---|
| Protein sequence | MGNVQSAVRA YDQPWRPAPG DLVELGRTLR LPLGQLRLQR TPVSGLKRRD KLVLGLLVLA
LHGAAAYWVS QAPTPELPVV PPQVPPMTIE FAAPAPPVVE PPPPAPAPPV VEPPPPPPVV
DELAAKPKPK PKPVPKPVVK QAPKPQPKPV EAPPPAPVAA PAPPAPAPPA PAPITPASAN
AAYLKNPAPE YPQMAQRRGW EGTVLLRVEV LPSGKPGQIQ VQKSSGRDAL DAAALAAVKR
WSFVPAKQGD VAQTGWVSVP IDFKLR
|
|---|
| |