| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5223 |
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| Symbol | |
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| ID | 5873037 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5836425 |
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| End bp | 5837255 |
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| Gene Length | 831 bp |
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| Protein Length | 276 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 641550359 |
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| Product | putative sigma54 specific transcriptional regulator |
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| Protein accession | YP_001671441 |
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| Protein GI | 167036210 |
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| COG category | [K] Transcription
[T] Signal transduction mechanisms |
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| COG ID | [COG3829] Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 29 |
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| Plasmid unclonability p-value | 0.6189 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 47 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTTTC AAAACCCGTT TGGCCAGCCG CTGCTGACCT TCCCCGAGCT GGACAAGAGC
CCGCTGAGCA TTCGTGCCAA GGCGCTGGTG TTCATCGACC CGCGCTCGCA GCAGCTGCGC
GAGGACCTTG AGCGCCTGGC GCCACAACCT GTGCCGGTGC TGATCCGTGG CGAAACCGGC
ACCGGCAAGG AGCTGCTGGC CCGGCAGATC CACCGTGCCA GCGACCGTGG CGGGCTGTTC
GTGTCGGTCA ACTGCGCGGC CATCAGCCCC ACCTACGCCG ATGCCGAATT GTTCGGCTAT
AGCGCCGGCA GTCATGGCGG CACAGCCAGC AGCCGCGCCG GCTGGTTTGG CTCGGCCAAT
GGCGGCACGC TGTACCTGGA CGAGATTGCC GACTTGCCGC TGGCCATCCA GGGCAAGTTG
CTGGCCGCAC TGGAAAACCG TGAGGTCACC CGGGTTGGCG CGCAGCAGCC ACAGCCAGTG
GATGTGCGCC TGGTCGCCGC GACCAGCATC GACCTGGCGC GCGTGGTACG TGCGGGGCGC
TTCAACGAGC GCCTGTACCA GTACCTGCGC GAGGGGGCGC TGGAACTGCC GCCGCTGCGT
GAACGGCCGG GCGACATCCT GCCGCTGGCC GAGTACTTCG TGGGCATTTA CAGCGTGCGC
CTGCAGCGGC CCGTGCCGTT GGTGAGCGAG GCGGCGCAGC AGGTGCTGGA AGCGCATTTC
TGGCCCGGCA ACACCCGCGA GCTGGAGAAC GTGATCCACT TTGCCTTGCT GGTGAATGAC
GGCGCAGAGA TCCTGCCGGA GGACCTCGAC CTGGCCAATC CCGCGCGCTA G
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| Protein sequence | MTFQNPFGQP LLTFPELDKS PLSIRAKALV FIDPRSQQLR EDLERLAPQP VPVLIRGETG
TGKELLARQI HRASDRGGLF VSVNCAAISP TYADAELFGY SAGSHGGTAS SRAGWFGSAN
GGTLYLDEIA DLPLAIQGKL LAALENREVT RVGAQQPQPV DVRLVAATSI DLARVVRAGR
FNERLYQYLR EGALELPPLR ERPGDILPLA EYFVGIYSVR LQRPVPLVSE AAQQVLEAHF
WPGNTRELEN VIHFALLVND GAEILPEDLD LANPAR
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