Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5218 |
Symbol | |
ID | 5873032 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | - |
Start bp | 5832196 |
End bp | 5833068 |
Gene Length | 873 bp |
Protein Length | 290 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 641550354 |
Product | extracellular solute-binding protein |
Protein accession | YP_001671436 |
Protein GI | 167036205 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 39 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 47 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAACTG CCAACTTCAC CAAACTGCTG GCACCGTTGT TCGGCCTGGC CTTGCTGGCC GGCTGCAACA AGGCCGACGA ACCGCCCAAG CCGGCGGCGG CATCGCCAGC CACCAGCTAC CTGGAAACCA TCAAGGCCCG CGACAAGCTG ATTGTCGGCG TGTTCACCGA CAAGCCGCCG TTCGGCTTCG TCGATGAGAA AGGCCGCTAT GTGGGCTTTG ACACCGACAT TGGCCGGCGC CTGGCCAAGG ACCTGCTGGG CGATGAAAAC AAGGTCGAGT TCGTTGCCGT GGAACCGGCC AGCCGTATTC CGTTCCTGCA GAGCGACAAG GTCGACCTGA TCCTCGCCAA CATGACCGTG ACCCCGGAGC GCAAGGAAGC GGTGGACTTC ACCAACCCCA ACCTGCGCGT TGCCGTGCAG GCCATCGTGG CGGATGGCAG CCCGGTGCAG AAGCTCGACG ACCTGGCCGA CAAGACCATC ATCGTGACCA CCGGCACCAC GGCCGATATC TGGCTGACCA AAAATCATCC CGACTGGAAG CTGCTCAAGT TCGAGAAGAA CAGCGAATCG CTGCAAGCCC TGGCCACCGG CCGTGGCGAT GCCTATGCCC AGGACAACCT GATCCTGTTC AGCTGGGCCA AGCAGAACCC GGGTTACCGC GTGCTGCCTG AGCTGCTGGG TGACGAAGCG CCGATTGCGC CGGCGGTGAA GAAGGGCAAC ACCGAGCTGC GAGACTGGGT GAATGCCGAG TTGGCCAAAC TGGGGGAAGA GAAGTTCTTG CTGAAGCTGT ATGACCAGTA TGTGCGCAAG GAACTGAGCG ATGACACCAA GCCGGAAAGC GTGATCGTCG AAGGGGGCAA GTGGCAGGGT TGA
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Protein sequence | MKTANFTKLL APLFGLALLA GCNKADEPPK PAAASPATSY LETIKARDKL IVGVFTDKPP FGFVDEKGRY VGFDTDIGRR LAKDLLGDEN KVEFVAVEPA SRIPFLQSDK VDLILANMTV TPERKEAVDF TNPNLRVAVQ AIVADGSPVQ KLDDLADKTI IVTTGTTADI WLTKNHPDWK LLKFEKNSES LQALATGRGD AYAQDNLILF SWAKQNPGYR VLPELLGDEA PIAPAVKKGN TELRDWVNAE LAKLGEEKFL LKLYDQYVRK ELSDDTKPES VIVEGGKWQG
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