| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5161 |
|---|
| Symbol | |
|---|
| ID | 5872976 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | - |
|---|
| Start bp | 5771627 |
|---|
| End bp | 5773159 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 641550299 |
|---|
| Product | signal recognition particle-docking protein FtsY |
|---|
| Protein accession | YP_001671381 |
|---|
| Protein GI | 167036150 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0552] Signal recognition particle GTPase |
|---|
| TIGRFAM ID | [TIGR00064] signal recognition particle-docking protein FtsY |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTTTGGTT CCAACGACGA CAAAAAAGCG CCGGCCGAAG CTGGCGAAAA GAAAGGCCTG
TTCAGCTGGT TTCGCAAGAA GCCGCAGCAA CCTGTCGCCG AACAGCCACA AGCCCCCGAG
CCGCAGGCTG CAGAGCCGGT AGCGCCGCAG CCCGCCGTCG AGCGCCCTGA AGCTGCTCCA
ATGGAGCCGG TGGCTGCACA GGCCCCAGCG CCTGCAACTG AAGCCCCTCG AGCTGCCGAG
CCAGCATTGG CCCCTGAGCC TGCAAATGCC CCAGTGGTAG CCCCGGTCCT TGAGTCTGCA
CCCGCCCCGG TGGTTGCCTC GGCCCCTGAG CCTGCCCTGT CCCCTGTGGA CGCGGGGTTG
CCTGCGAGTG CGCAGTCTGC CGCCCCGCAG GTCGAAACCC CTGCGCCCGT AGCTGTTCCT
GCCACTCAAA TCATCGAACC CCCTGTCAGC AACCTGGTCC TGCCCGTTGC CGAAGAGCCC
GTCGCGCTCG TCCCTGACCT GGAGCCAAAG GCCCCGCCTG CGATCCCCGA GCGCCCGGTG
GCAGAGCCCG TGCAGCCTGA GCCCGAGCCA GCCCCTGTCG CCGCCGCAAC CGTTACCGAG
CAAGCCAAGC CCGGCTTCTT CGCCCGGCTC AAACAGGGAC TGTCCAAGAC CAGCGCCAGT
ATCGGCGAGG GCATGGCCAG CCTGTTTCTT GGCAAGAAGG TCATCGACGA CGACCTGCTC
GACGAAATCG AAACGCGCCT GCTGACCGCC GACGTCGGCG TGGAAGCCAC CTCGGCCATC
GTCCAGAACC TGACCCAGAA GGTCGCGCGC AAGCAGCTGG CCGACGCCGA TGCCCTGTAC
AAATCGTTGC AGGAAGAACT GGCCGCGCTG CTGCGCCCAG TCGAACAGCC GCTGAAAGTG
CAGGCACAGA ACAAACCCTA TGTGATCCTC GTGGTTGGCG TGAACGGCGC CGGCAAGACC
ACCACCATCG GCAAACTGGC GAAGAAGCTG CAGCTGGACG GCAAGAAGGT GATGCTGGCT
GCCGGTGATA CCTTCCGTGC GGCGGCGGTC GAGCAGTTGC AGGTATGGGG CGAGCGTAAC
CAGATTCCGG TGATCGCTCA GCATACCGGT GCCGACTCCG CTTCGGTGAT CTTCGACGCC
GTGCAGGCTG CCAAGGCCCG TGGCGTCGAC GTGCTGATCG CTGATACCGC CGGGCGCCTG
CACACCAAAG ACAACCTGAT GGAAGAGCTG AAGAAGGTCC GCCGGGTCAT CGGCAAGCTT
GATGCCGAGG CGCCGCACGA GGTGTTGCTG GTGCTCGATG CCGGCACCGG CCAGAACGCC
ATCAGCCAAG CCAAGTACTT CAATCAGAGC GTCGAGCTGA CCGGCCTGGC CCTGACCAAG
CTGGACGGCA CTGCCAAAGG CGGGGTGATC TTCGCCCTGG CCAAGCAGTT CAATATCCCA
ATCCGCTTCA TCGGTGTCGG TGAAGGTATC GACGACCTGC GCACCTTTGA AGCCGAGCCG
TTCGTCAAGG CTCTGTTCGC CGAGCGAGAC TGA
|
|---|
| Protein sequence | MFGSNDDKKA PAEAGEKKGL FSWFRKKPQQ PVAEQPQAPE PQAAEPVAPQ PAVERPEAAP
MEPVAAQAPA PATEAPRAAE PALAPEPANA PVVAPVLESA PAPVVASAPE PALSPVDAGL
PASAQSAAPQ VETPAPVAVP ATQIIEPPVS NLVLPVAEEP VALVPDLEPK APPAIPERPV
AEPVQPEPEP APVAAATVTE QAKPGFFARL KQGLSKTSAS IGEGMASLFL GKKVIDDDLL
DEIETRLLTA DVGVEATSAI VQNLTQKVAR KQLADADALY KSLQEELAAL LRPVEQPLKV
QAQNKPYVIL VVGVNGAGKT TTIGKLAKKL QLDGKKVMLA AGDTFRAAAV EQLQVWGERN
QIPVIAQHTG ADSASVIFDA VQAAKARGVD VLIADTAGRL HTKDNLMEEL KKVRRVIGKL
DAEAPHEVLL VLDAGTGQNA ISQAKYFNQS VELTGLALTK LDGTAKGGVI FALAKQFNIP
IRFIGVGEGI DDLRTFEAEP FVKALFAERD
|
|---|
| |