| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5142 |
|---|
| Symbol | |
|---|
| ID | 5872957 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas putida GB-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010322 |
|---|
| Strand | + |
|---|
| Start bp | 5756725 |
|---|
| End bp | 5757351 |
|---|
| Gene Length | 627 bp |
|---|
| Protein Length | 208 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 62% |
|---|
| IMG OID | 641550280 |
|---|
| Product | NLP/P60 protein |
|---|
| Protein accession | YP_001671362 |
|---|
| Protein GI | 167036131 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0791] Cell wall-associated hydrolases (invasion-associated proteins) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.0699781 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 39 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCCTT TGATCAAGAC ATGGCTGACC CTCTGCCTAT TATTGCCCCT GGCCGCCCAC
GCCACCAATC GTGAGCAACG TCTTCCCAAT GGTTTCACCG GCTACACCAC CAACGCCTCG
GTGAAACACG CACCGGTCAA GCAAACCACA CTGCGCGCTC GCCCAAGCAA TGCCGCCAGC
AGCCGCGGCG TGCAGGTTGC CGCCATGTCG CCGAAGCAAA GCAGCGATGT GCTCAGCCGT
GCGGTGAATG TGCTCGGTAC CCCCTATGTT TGGGGCGGCA GCAGCCCGAA AAAAGGCTTC
GACTGCAGCG GGCTGGTCAA GTACGCCTTC AACGACGTCG CCGATGTCGA CCTGCCGCGC
ACCTCCAATG CCATGGCCCA GGGCCACGGC GTGAAGGTGG CCAAGGGTGA CCTGAAGCCT
GGCGACCTGA TTTTCTTCAA CATCAAGAGC CGCCGGGTGA ACCATGTTGC CATTTACCTG
GGCAACGACC GCTTCATCCA CGCCCCACGG CGCGGCAAGC GGGTGAGCAT CGACACCCTG
AGCAAGCCGT ACTGGCAGAA GCATTACGTC GTGGCCAAGC GAGTACTGCC GAAGGAACAG
CAGCAGCTGA GCCTGGCCAA GCGTTAA
|
|---|
| Protein sequence | MPPLIKTWLT LCLLLPLAAH ATNREQRLPN GFTGYTTNAS VKHAPVKQTT LRARPSNAAS
SRGVQVAAMS PKQSSDVLSR AVNVLGTPYV WGGSSPKKGF DCSGLVKYAF NDVADVDLPR
TSNAMAQGHG VKVAKGDLKP GDLIFFNIKS RRVNHVAIYL GNDRFIHAPR RGKRVSIDTL
SKPYWQKHYV VAKRVLPKEQ QQLSLAKR
|
|---|
| |