| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5130 |
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| Symbol | |
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| ID | 5872945 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5742243 |
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| End bp | 5743505 |
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| Gene Length | 1263 bp |
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| Protein Length | 420 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 641550268 |
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| Product | type IV pilus secretin PilQ |
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| Protein accession | YP_001671350 |
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| Protein GI | 167036119 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4796] Type II secretory pathway, component HofQ |
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| TIGRFAM ID | [TIGR02515] type IV pilus secretin (or competence protein) PilQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 0.916141 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAACGT GGATGAAATA TCTGCTGGCA ACCCTGCTGT CGGTTCCGCT GGCGTCGGCG
ACGTCTTATG AGGGTGAGCC GCTGTCGTTG AACTTTCAGG ATGTAGAGGT GCGCGCGGTA
CTGCAGGTAC TGGCGGACTA TGCCGGGGTA AACCTGGTAG CCAGCGATGC GGTGCAAGGC
AACGTCACGA TGCGCTTGCA GGACGTGCCG TGGGATCAGG CACTGGACCT GGTGTTGCGC
AGCAAGGGCC TGGCTCGGCG CCAGGAGGGT AATGTGCTGT TGGTGGCGCC TGCCGCCGAC
TTTGCCGCAC AGTCAGCCGG GACCCGTGCG GGGCAAGTGC TGGAAGCGCA GTTGCAACCT
TTGCGTCGGG AACTGCTGCC TATCCACCAC GCCAAGGCTG CCGATTTGGC GGAGTTGCTA
CAGTCGAGCC TGGTGGGTGA CGGTATTCTC ACGGGTAGCC TGAGTGTCGA TGAGCGCACC
AATACCCTGG TGGTGCACAT GCCTGCCGAC CGCCTGGCCG AATTGCGGCA ACTGGTGACG
CAGTTGGATG TGCCGGTGCG CCAGGTAGCG ATCGAGGCGC GTATCGTCGA GGCCAACGTC
GATTACGAGA AGAGCCTGGG GGTGCGCTGG GGCGGGCCGC TATACGGCGC GCAACTGCGG
CCAGGCAAAG AATTGTTCGT CGATCTCGGC GTCGAGCGTG CCGGCGGCAG TATCGGCCTT
GGGTTATTGC GCGGGGACGT GTTGCTGGAC CTTGAGCTCA GCGCCATGGA AAAGAGTGGT
AACGGCGAGA TCATTTCGCA GCCCAAGGTG GTCACGGCCG ACAAGGAAAC GGCGAGGATC
CTCAAGGGAA CCGAGGTGCC TTACCAGGAA ACCAGCCAAA GCGGTGCGAC CTCGGTATCT
TTTCGCGAAG CGTCGCTGTC GTTGGAAGTT ACCCCGCAGA TCACCCCGGA CAATAAGGTG
ATCATGACCG TCAGGGTGAC CAAGGACGAG CCGGATTACG TCAATGCCTT GAACAACGTA
CCGCCGATCC GCAAGAACGA GGTAAATGCC AAGGTTCGTG TGGCTGATGG CGAAACGATC
GTGATTGGTG GCGTTTACTC GACTTCGCAA AACAATGTGG TCGACAAGGT GCCATTTTTC
GGCGATCTGC CGTATGTTGG GCGGCTGTTT CGACGCGATG CATTACAAGA GAAAAAATCC
GAGCTGCTGG TCTTCCTGAC TCCGCGTATC ATGAGTGACC AGGCGATTGC TGTGAGTCGT
TGA
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| Protein sequence | MKTWMKYLLA TLLSVPLASA TSYEGEPLSL NFQDVEVRAV LQVLADYAGV NLVASDAVQG
NVTMRLQDVP WDQALDLVLR SKGLARRQEG NVLLVAPAAD FAAQSAGTRA GQVLEAQLQP
LRRELLPIHH AKAADLAELL QSSLVGDGIL TGSLSVDERT NTLVVHMPAD RLAELRQLVT
QLDVPVRQVA IEARIVEANV DYEKSLGVRW GGPLYGAQLR PGKELFVDLG VERAGGSIGL
GLLRGDVLLD LELSAMEKSG NGEIISQPKV VTADKETARI LKGTEVPYQE TSQSGATSVS
FREASLSLEV TPQITPDNKV IMTVRVTKDE PDYVNALNNV PPIRKNEVNA KVRVADGETI
VIGGVYSTSQ NNVVDKVPFF GDLPYVGRLF RRDALQEKKS ELLVFLTPRI MSDQAIAVSR
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