| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5124 |
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| Symbol | hemE |
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| ID | 5872939 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5731370 |
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| End bp | 5732434 |
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| Gene Length | 1065 bp |
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| Protein Length | 354 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641550262 |
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| Product | uroporphyrinogen decarboxylase |
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| Protein accession | YP_001671344 |
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| Protein GI | 167036113 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0407] Uroporphyrinogen-III decarboxylase |
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| TIGRFAM ID | [TIGR01464] uroporphyrinogen decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 47 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 46 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTGCCC TGAAGAACGA TCGTTTCCTG CGTGCTCTGC TCAAGCAACC CGTAGACGTT
ACCCCGGTGT GGATGATGCG CCAGGCCGGC CGCTACCTGC CGGAGTACCG CGCCAGCCGC
GCCAAGGCCG GTGACTTCAT GAGCCTGTGC ATGAACCCGC AGTTTGCCTG CGAGGTCACC
CTGCAGCCGC TGGACCGCTA CCCGCTGGAC GCAGCGATCC TGTTCTCGGA CATCCTCACC
ATCCCTGATG CCATGGGCCT GGGCCTGTAC TTCGAAACCG GCGAAGGCCC GCGTTTCAAG
AAGGTCATCA GCACCCCGGC CGACATCGAA GCACTGCCCA TCCCCGACCC GCAAAAAGAT
CTGGGCTACG TGATGGACGC GGTCAGCACC ATCCGTCGCG AGCTTAACGG CCGCGTGCCG
TTGATCGGCT TCTCCGGCAG CCCTTGGACC CTGGCCACCT ACATGGTTGA AGGCGGCTCG
TCGAAGGACT TCCGCAAGAC CAAGGCCATG GCCTACGACA ACCCGCAAGC CCTGCACCTG
CTGCTGGACA AGCTGGCCCA GTCGGTCACC AGCTACCTGA ACGGCCAGAT TCTGGCCGGT
GCTCAGGCTG TGCAAATTTT CGATACCTGG GGCGGCAACC TGTCGGCGGC GGCCTACCAG
GAATTCTCCC TGGCCTACAT GCGCAAGATC GTCAGCGGCC TGATCCGCGA GCACGAAGGG
CGCAAGGTGC CGGTGATCCT GTTCACCAAG AACGGCGGCC TTTGGCTGGA AAGCATCGCC
GAAGCCGGTG CCGATGCACT GGGCCTGGAC TGGACCTGCG AGATCGGCGA CGCCCGCCGC
CGCGTGGGTG ACAGGGTGGC CCTGCAAGGC AACATGGACC CGACCGTGCT GTACGCCAAG
CCCGAGGCCA TCCGCCAGGA AGTGGCGCGC ATCCTGGCCA GCTATGGCCA AGGCACAGGC
CACGTATTCA ACCTGGGCCA TGGCATTACC CCGGAAGTCG ACCCGGAGCA TGCTGGCGTG
TTCATCAACG CCGTGCATGA ACTGTCGGCG CAGTACCACC AGTGA
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| Protein sequence | MTALKNDRFL RALLKQPVDV TPVWMMRQAG RYLPEYRASR AKAGDFMSLC MNPQFACEVT
LQPLDRYPLD AAILFSDILT IPDAMGLGLY FETGEGPRFK KVISTPADIE ALPIPDPQKD
LGYVMDAVST IRRELNGRVP LIGFSGSPWT LATYMVEGGS SKDFRKTKAM AYDNPQALHL
LLDKLAQSVT SYLNGQILAG AQAVQIFDTW GGNLSAAAYQ EFSLAYMRKI VSGLIREHEG
RKVPVILFTK NGGLWLESIA EAGADALGLD WTCEIGDARR RVGDRVALQG NMDPTVLYAK
PEAIRQEVAR ILASYGQGTG HVFNLGHGIT PEVDPEHAGV FINAVHELSA QYHQ
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