| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5115 |
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| Symbol | |
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| ID | 5872930 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | + |
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| Start bp | 5718704 |
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| End bp | 5720401 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641550253 |
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| Product | choline dehydrogenase |
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| Protein accession | YP_001671335 |
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| Protein GI | 167036104 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
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| TIGRFAM ID | [TIGR01810] choline dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.179508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 50 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCCAAG AATTCGATTA CATCATCGTC GGTGCCGGCT CGGCCGGTAA CACCCTGGCT
ACCCGCCTGA CCGAAGACGC CGGCGTCACC GTCCTGCTGC TTGAAGCCGG TGGCCCTGAT
TACCGCTTCG ACTTCCGCAC CCAGATGCCA GCTGCCCTGG CCTTCCCGCT GCAGGGCCGC
CGCTACAACT GGGCCTACGA GACCGATCCC GAGCCGCACA TGGACGGCCG CCGCATGGAA
TGTGGCCGTG GCAAAGGCCT GGGTGGCTCG TCGCTGATCA ACGGCATGTG CTACATCCGT
GGCAACGCCA TGGACTTCGA CGGCTGGGCA GAACTGCCAG GCCTGCAAGA CTGGACCTAC
CTGGACTGCC TGCCGTACTT CCGCAAAGCC GAAACCCGCG ACATCGGCCC GAACGACTAC
CACGGTGGCG AAGGCCCGGT CAGCGTCGCC ACGCCGAAGG CTGGCAACAA CCCGTTGTTC
CACGCCATGG TTGAAGCCGG CGTACAAGCC GGTTACCCAC GCACCGAAGA CCTCAACGGC
TACCAGCAGG AAGGCTTCGG CCCGATGGAC CGTTCGGTCA CCAAGAACGG CCGCCGTTCC
AGCACCGCCC GTGGCTACCT GGACCAGGCC AAGAAGCGCC CGAACCTGAC CATCGTCACC
CACGCTCTGA GCGACCGCGT GCTGTTCGAC GGCAAGCGCG CCGTAGGCGT GACCTACCTG
GTCGGCGACA GTGAAGAGCG CGTTGAAGCC CGCGCCCGCA AGGAAGTGAT CGTCAGCTCC
GGCGCCATCG CCTCGCCGCA GCTGCTGCAG CGCTCCGGCG TTGGCCCGCG CGCCCTGCTG
GAAAGCCTCG ACATCCCGGT TGTGCACGAT CTGCCGGGCG TTGGCGAAAA CCTGCAGGAC
CACCTTGAGC TGTACCTGCA GTACGCCTGC ACCCAACCGG TATCGCTGTA CCCATCGCTG
CTTTGGTGGA ACCAGCCAGC TATCGGTGCA GAGTGGATGT TCAAAGGCAC CGGTATCGGC
GCCAGCAACC AGTTCGAGGC CGGTGGTTTC ATCCGTACCC GCCCTGAGTT CAAGTGGCCG
AACATTCAGT ACCACTTCCT GCCAGTCGCC ATTAACTACA ACGGCTCCAA TGGCGTGAAG
GAACACGGCT TCCAGGCGCA CATGGGCTCC ATGCGCTCGC CTGCCCGCGG CCGCATCCAG
GCCAAGTCGA AAGACCCGCG CCAGCACCCA AGCATCCTGT TCAACTACAT GTCCACCGAG
CAGGACTGGC AGGAGTTCCG CGACGGTATC CGCCTGACCC GCGAAATCAT GGCCCAGCCG
GCGCTGGACC CGTACCGTGG CCGCGAAATC AGCCCAGGCG CCGACGTGCA AACCGACGAG
CAGCTGGACA AGTTCATCCG CGAGCACGCC GAAACCGCCT TCCACCCGTC CTGCTCGTGC
AAGATGGGCA CCGACGACAT GGCAGTGGTC GATGGCGAAG GCCGCGTGCA TGGCATGAAG
GGCCTGCGTG TGGTCGATGC GTCGATCATG CCGCTGATCA TCACCGGCAA CCTCAACGCC
ACCACGATCA TGATCGCCGA GAAAATTTCG GACAAGATCC GCGGCCGCAA GCCGTTGCCG
CGCAGCACCG CCAAGTACTA TGTGGCGGGT GATGCACCGG TGAAAGGCAA GCCGATGCGT
GAAGTGAAGC AGGCGTAA
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| Protein sequence | MSQEFDYIIV GAGSAGNTLA TRLTEDAGVT VLLLEAGGPD YRFDFRTQMP AALAFPLQGR
RYNWAYETDP EPHMDGRRME CGRGKGLGGS SLINGMCYIR GNAMDFDGWA ELPGLQDWTY
LDCLPYFRKA ETRDIGPNDY HGGEGPVSVA TPKAGNNPLF HAMVEAGVQA GYPRTEDLNG
YQQEGFGPMD RSVTKNGRRS STARGYLDQA KKRPNLTIVT HALSDRVLFD GKRAVGVTYL
VGDSEERVEA RARKEVIVSS GAIASPQLLQ RSGVGPRALL ESLDIPVVHD LPGVGENLQD
HLELYLQYAC TQPVSLYPSL LWWNQPAIGA EWMFKGTGIG ASNQFEAGGF IRTRPEFKWP
NIQYHFLPVA INYNGSNGVK EHGFQAHMGS MRSPARGRIQ AKSKDPRQHP SILFNYMSTE
QDWQEFRDGI RLTREIMAQP ALDPYRGREI SPGADVQTDE QLDKFIREHA ETAFHPSCSC
KMGTDDMAVV DGEGRVHGMK GLRVVDASIM PLIITGNLNA TTIMIAEKIS DKIRGRKPLP
RSTAKYYVAG DAPVKGKPMR EVKQA
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