| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5112 |
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| Symbol | |
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| ID | 5872927 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5713978 |
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| End bp | 5715981 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 641550250 |
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| Product | choline/carnitine/betaine transporter |
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| Protein accession | YP_001671332 |
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| Protein GI | 167036101 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.181568 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 48 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTTCTG CCTCACTTAC CAAGCCCCCC GCCGAGAGGG TACGGGTCAA CCGCGTGGTG
TTCTTCACCT CCGCGCTGAT GATCCTTGTT CTGACTGCCT TGCTGATCGC TGTACCCGAA
ACCGCAGGCC AAGTGCTGGG CGTGGCCCAG AAATGGCTGA CGCGTACCTT TGGCTGGTAC
TACATGCTGG TCATCTGCGG CTACTTGCTG TTCGTCGTCT ACCTGGCCTT CTCCGACTAC
GGCAGCCTCA AGCTGGGTGG CAAGGATGAC CAGCCTGACT TCAGCTATGG CGCCTGGGCG
GGCATGCTGT TCTCGTCCGG TATCGGTATT TCGCTGCTGT ACTTCGGCGC TTCCGAGCCG
CTGGACCACT ACTTCAACCC ACCGGAAGGC ACCCCAGCCA GCCTCGAGGC CGCGCGCCAG
GGCCTGCAGC TGACCTTCCT GCACTGGGGC CTGCACGGCT GGGCGATCTA TGCCCTGGTC
GGCCTGGCCG TGGGTTACTT CGCCTACCGC CACAACCAGC CGCTGGCCCT GCGTTCGGCG
CTGTACCCGC TGGTCGGCGA GCGTTGGGTC AAGGGTGCTG CCGGCAACGC CGTCGACATC
TTTGGCATGT TCGTCACCCT GCTGGGCCTG GTGACCAACC TAGGTATCGG CTCGATGCAG
GTATCCTCGG GCCTGGAATA CCTATTCGGC ATGGACCACA GCAAGACCAA CCTGCTGGTG
GTGATCCTGG TCATGGCCGG TGTGGCCACC GTGGCTGCGG TGTCGGGTGT GGAAAACGGC
ATTCGCCGCC TGTCCAACCT GAACATCATG CTGTTCAGCG GCCTGCTGAT CTTCGTGCTG
CTGGGCGGTG AAACCCTGCA CCTGCTCAAC GGCTTCGTGC AGAACGTCGG CGACTACCTG
AACGGCATCG TGCTGAAAAC CTTCGACCTG TATGTGTACG AAGGCGAAGC CGGCAAGTCC
GAGCGCTGGC TGGGCCTGTG GACCGTGTTC TATTGGGCCT GGTGGATCTC CTGGGGCCCA
TTCGTCGGTA TGTTCATTGC CCGTATCTCC AAGGGCCGCA CCGTGCGCCA GTTGGTGATG
GGTGTGCTGT TGATCCCGCT GGGCTTCACC TTGGCGTGGC TGTCGATCTT CGGCAACACC
GCACTGGACC TGGTGATCAA CCAGGGCGCC GTGGAGCTGG GCAAGACTGC GCTGGAACAG
CCGTCGATGT CGATCTACCA ACTGCTGGAA TACTTCCCGG CAGCCAAGAT CGTGATTGGT
GTGGCGGTGT TCGTCGGCTT CGTGCTGTTC CTTACCCCGG CCGACTCCGG TGCGGTGATG
ATGGCCAACC TGTCGTGCAA AGGCGGCAAG GTCGACGAAG ACGCCCCGCA CTGGATGGTG
GTGTTCTGGT CGGTGGTTAT CACCCTGGTC ACCATCGGCC TGCTGTTCGC CGGTAACTTC
GAGGCCATGC AGACCATGGT GGTGCTGGCG GGCCTGCCGT TCTCGGTGGT GCTGGTACTG
TTCATGTTCG GGTTGTACAA GGCCATGAAG CAGGACGTGG CAGTCGAGCA GGAGCGTGCC
GAGCTGGCCG CCCGCGGTCG CCGCGGCTTC AGCGAGCGCC TGAGCCAGCT GGAGCTGCAG
CCGACCCAGG CCGTGGTGCA GCGGTTCATG GACAAGCAGG TCAGCCCGGC GCTGAAAGAA
GCGGCCGCAC AGCTGCAGAC CCTGGGCTTC GAGGTAGAAA CCCGGGTTGG CCAGTCGCGC
AACATGATGG GCCTGCGGGT GATGATGGAA GAGGGCAACC CCTTCGTCTA CGAAGCCAGC
CTGGACGGTT ACCTGGCCGC GCCGAGCGAG GCGCCGGTCG AAGGCGAGCC GGAGGTGCAG
CAGCGCTTCT ACCGCGCCGA GGTGTACCTG CACGACGGCA GCCAGGAATA CGACCTGATG
GGCTTCACTC GCGAACAAAT CGTGCGTGAT GTGCTGGATC AGTTCGAAAG CCACCGCCAG
TTGCTGGGGC GTGTGTACAG CTGA
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| Protein sequence | MSSASLTKPP AERVRVNRVV FFTSALMILV LTALLIAVPE TAGQVLGVAQ KWLTRTFGWY
YMLVICGYLL FVVYLAFSDY GSLKLGGKDD QPDFSYGAWA GMLFSSGIGI SLLYFGASEP
LDHYFNPPEG TPASLEAARQ GLQLTFLHWG LHGWAIYALV GLAVGYFAYR HNQPLALRSA
LYPLVGERWV KGAAGNAVDI FGMFVTLLGL VTNLGIGSMQ VSSGLEYLFG MDHSKTNLLV
VILVMAGVAT VAAVSGVENG IRRLSNLNIM LFSGLLIFVL LGGETLHLLN GFVQNVGDYL
NGIVLKTFDL YVYEGEAGKS ERWLGLWTVF YWAWWISWGP FVGMFIARIS KGRTVRQLVM
GVLLIPLGFT LAWLSIFGNT ALDLVINQGA VELGKTALEQ PSMSIYQLLE YFPAAKIVIG
VAVFVGFVLF LTPADSGAVM MANLSCKGGK VDEDAPHWMV VFWSVVITLV TIGLLFAGNF
EAMQTMVVLA GLPFSVVLVL FMFGLYKAMK QDVAVEQERA ELAARGRRGF SERLSQLELQ
PTQAVVQRFM DKQVSPALKE AAAQLQTLGF EVETRVGQSR NMMGLRVMME EGNPFVYEAS
LDGYLAAPSE APVEGEPEVQ QRFYRAEVYL HDGSQEYDLM GFTREQIVRD VLDQFESHRQ
LLGRVYS
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