| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PputGB1_5081 |
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| Symbol | |
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| ID | 5872896 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas putida GB-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010322 |
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| Strand | - |
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| Start bp | 5675939 |
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| End bp | 5677342 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 641550219 |
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| Product | amino acid permease-associated region |
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| Protein accession | YP_001671301 |
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| Protein GI | 167036070 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1113] Gamma-aminobutyrate permease and related permeases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.0324065 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 41 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCAACAAG CTCAAGGTCT CAAACGCGGG CTAAGTGCCC GCCACATCCG TTTCATGGCC
CTCGGTTCCG CCATCGGCAC CGGGCTGTTC TACGGTTCCG CCTCGGCCAT CCAGATGGCC
GGCCCGGCCG TGCTGCTGGC CTACCTGATC GGCGGCGCCG CTGTGTTCAT GGTCATGCGC
GCCCTCGGCG AAATGGCCGT GCACAACCCG GTGGCCGGTT CCTTCGGTCA CTACGCCAGC
ACCTACCTCG GCCCCATGGC CGGCTTCATC CTCGGCTGGA CCTACGCCTT CGAGATGGTC
ATCGTCGCCA TCGCCGACGT CACCGCCTTC GGGATCTACA TGGGCTTCTG GTTTCCGGAG
GTCGCCCGCT GGATCTGGGT GCTGGGTATC GTGTTCATCA TCGGCGGCCT CAACCTGTGC
AACGTCAAGG TATTTGGCGA GATGGAGTTC TGGCTGTCGC TGCTCAAGGT CGGCGCCATC
GTCGCGATGA TCCTGGCCGG GCTCGGCATC ATGGCCTTCG GTTTCAGCCA GGTGGGCACC
GGGCATGCCG TGGGCATGAG CAACCTGTTC GACCACGGCG GCTTCATGCC TAACGGCATC
GGCGGGCTGA TTGCGTCGTT TGCCGTGGTG ATGTTCGCTT TCGGCGGTAT CGAGATCATC
GGCGTCACCG CCGGTGAGGC CAAGGACCCG CAACGCGTCA TCCCCAAAGC GATCAACGCG
GTGCCCCTGC GCATCCTGCT GTTCTACGTG CTCACCCTGT TCGTGCTGAT GTGCCTGTAC
CCCTGGCCGC AAATCGGCAG CCAGGGCAGC CCGTTCGTGC AGATCTTCAG CAACCTGGGG
ATTGGCTCGG CCGCCGCCGT GCTGAATGTC GTGGTGATTT CCGCCGCCAT CTCGGCCATC
AACAGCGACA TCTTCGGCGC CGGCCGCATG ATGTACGGCC TGGCCCATCA AGGCCATGCG
CCACGCAGCT TCGGCAAGCT GTCGAAACAT GGCGTGCCGT GGATGACCGT GGTGGTGATG
GGCGCTGCAT TGCTGATCGG CGTGCTGCTC AACTACCTGA TCCCGGAAAA CGTGTTCCTG
CTGATTGCCT CGATCGCCAC CTTCGCCACG GTGTGGGTGT GGCTGATGAT CCTGCTTACC
CAGGTGGCCA TGCGCCGCAG CATGAGCCGT GAGGAAGTGG CCCAGCTCAA GTTCCCGGTA
CCGTTCTGGC CCTATGGCCC GGCCATGGCC ATTGCGTTCA TGGTGTTCAT CTTTGGCGTG
CTTGGCTACT TCCCGGACAC CCAGGCGGCA TTGATCGTCG GCGTGATCTG GGTGGTGTTC
CTGGTGGCGT CCTACCTGCT GTGGTGCAAG CCGCGCGCAG GGCAGGGCCA GCCGGCAGTG
GAACCGGCCG AGCTGCACCG CTAG
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| Protein sequence | MQQAQGLKRG LSARHIRFMA LGSAIGTGLF YGSASAIQMA GPAVLLAYLI GGAAVFMVMR
ALGEMAVHNP VAGSFGHYAS TYLGPMAGFI LGWTYAFEMV IVAIADVTAF GIYMGFWFPE
VARWIWVLGI VFIIGGLNLC NVKVFGEMEF WLSLLKVGAI VAMILAGLGI MAFGFSQVGT
GHAVGMSNLF DHGGFMPNGI GGLIASFAVV MFAFGGIEII GVTAGEAKDP QRVIPKAINA
VPLRILLFYV LTLFVLMCLY PWPQIGSQGS PFVQIFSNLG IGSAAAVLNV VVISAAISAI
NSDIFGAGRM MYGLAHQGHA PRSFGKLSKH GVPWMTVVVM GAALLIGVLL NYLIPENVFL
LIASIATFAT VWVWLMILLT QVAMRRSMSR EEVAQLKFPV PFWPYGPAMA IAFMVFIFGV
LGYFPDTQAA LIVGVIWVVF LVASYLLWCK PRAGQGQPAV EPAELHR
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