Gene PputGB1_5081 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_5081 
Symbol 
ID5872896 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5675939 
End bp5677342 
Gene Length1404 bp 
Protein Length467 aa 
Translation table11 
GC content64% 
IMG OID641550219 
Productamino acid permease-associated region 
Protein accessionYP_001671301 
Protein GI167036070 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1113] Gamma-aminobutyrate permease and related permeases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.0324065 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones41 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAACAAG CTCAAGGTCT CAAACGCGGG CTAAGTGCCC GCCACATCCG TTTCATGGCC 
CTCGGTTCCG CCATCGGCAC CGGGCTGTTC TACGGTTCCG CCTCGGCCAT CCAGATGGCC
GGCCCGGCCG TGCTGCTGGC CTACCTGATC GGCGGCGCCG CTGTGTTCAT GGTCATGCGC
GCCCTCGGCG AAATGGCCGT GCACAACCCG GTGGCCGGTT CCTTCGGTCA CTACGCCAGC
ACCTACCTCG GCCCCATGGC CGGCTTCATC CTCGGCTGGA CCTACGCCTT CGAGATGGTC
ATCGTCGCCA TCGCCGACGT CACCGCCTTC GGGATCTACA TGGGCTTCTG GTTTCCGGAG
GTCGCCCGCT GGATCTGGGT GCTGGGTATC GTGTTCATCA TCGGCGGCCT CAACCTGTGC
AACGTCAAGG TATTTGGCGA GATGGAGTTC TGGCTGTCGC TGCTCAAGGT CGGCGCCATC
GTCGCGATGA TCCTGGCCGG GCTCGGCATC ATGGCCTTCG GTTTCAGCCA GGTGGGCACC
GGGCATGCCG TGGGCATGAG CAACCTGTTC GACCACGGCG GCTTCATGCC TAACGGCATC
GGCGGGCTGA TTGCGTCGTT TGCCGTGGTG ATGTTCGCTT TCGGCGGTAT CGAGATCATC
GGCGTCACCG CCGGTGAGGC CAAGGACCCG CAACGCGTCA TCCCCAAAGC GATCAACGCG
GTGCCCCTGC GCATCCTGCT GTTCTACGTG CTCACCCTGT TCGTGCTGAT GTGCCTGTAC
CCCTGGCCGC AAATCGGCAG CCAGGGCAGC CCGTTCGTGC AGATCTTCAG CAACCTGGGG
ATTGGCTCGG CCGCCGCCGT GCTGAATGTC GTGGTGATTT CCGCCGCCAT CTCGGCCATC
AACAGCGACA TCTTCGGCGC CGGCCGCATG ATGTACGGCC TGGCCCATCA AGGCCATGCG
CCACGCAGCT TCGGCAAGCT GTCGAAACAT GGCGTGCCGT GGATGACCGT GGTGGTGATG
GGCGCTGCAT TGCTGATCGG CGTGCTGCTC AACTACCTGA TCCCGGAAAA CGTGTTCCTG
CTGATTGCCT CGATCGCCAC CTTCGCCACG GTGTGGGTGT GGCTGATGAT CCTGCTTACC
CAGGTGGCCA TGCGCCGCAG CATGAGCCGT GAGGAAGTGG CCCAGCTCAA GTTCCCGGTA
CCGTTCTGGC CCTATGGCCC GGCCATGGCC ATTGCGTTCA TGGTGTTCAT CTTTGGCGTG
CTTGGCTACT TCCCGGACAC CCAGGCGGCA TTGATCGTCG GCGTGATCTG GGTGGTGTTC
CTGGTGGCGT CCTACCTGCT GTGGTGCAAG CCGCGCGCAG GGCAGGGCCA GCCGGCAGTG
GAACCGGCCG AGCTGCACCG CTAG
 
Protein sequence
MQQAQGLKRG LSARHIRFMA LGSAIGTGLF YGSASAIQMA GPAVLLAYLI GGAAVFMVMR 
ALGEMAVHNP VAGSFGHYAS TYLGPMAGFI LGWTYAFEMV IVAIADVTAF GIYMGFWFPE
VARWIWVLGI VFIIGGLNLC NVKVFGEMEF WLSLLKVGAI VAMILAGLGI MAFGFSQVGT
GHAVGMSNLF DHGGFMPNGI GGLIASFAVV MFAFGGIEII GVTAGEAKDP QRVIPKAINA
VPLRILLFYV LTLFVLMCLY PWPQIGSQGS PFVQIFSNLG IGSAAAVLNV VVISAAISAI
NSDIFGAGRM MYGLAHQGHA PRSFGKLSKH GVPWMTVVVM GAALLIGVLL NYLIPENVFL
LIASIATFAT VWVWLMILLT QVAMRRSMSR EEVAQLKFPV PFWPYGPAMA IAFMVFIFGV
LGYFPDTQAA LIVGVIWVVF LVASYLLWCK PRAGQGQPAV EPAELHR