Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PputGB1_5035 |
Symbol | |
ID | 5872850 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas putida GB-1 |
Kingdom | Bacteria |
Replicon accession | NC_010322 |
Strand | + |
Start bp | 5623989 |
End bp | 5624708 |
Gene Length | 720 bp |
Protein Length | 239 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 641550173 |
Product | 16S ribosomal RNA methyltransferase RsmE |
Protein accession | YP_001671255 |
Protein GI | 167036024 |
COG category | [S] Function unknown |
COG ID | [COG1385] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR00046] RNA methyltransferase, RsmE family |
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Plasmid Coverage information |
Num covering plasmid clones | 32 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 40 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGACTGT CCCGCTTCTT CATCGACGCC CCCCTGAGCC TTGGCGAACA CGACCTGCCC GAGGCCCAGG CCCACTACAT CGGCCGCGTG CTGCGCATGG CCCCCGGCGA CGCCGTGCAG CTGTTCGACG GCAGCGGCCA GGAATACCTC GGCCAACTGC TTGAAGTGGG CAAGAAAACC GTGCGTGTCA GCCTCGACCA AGCCCTCACC GGCCAGGCCG ACTCACCGCT GCACGTGCAC CTCGGCCAAG GCCTGTCGCG CGGCGAACGC ATGGACTGGG CGATCCAGAA GGCCACCGAA CTGGGCGCCA ACGAAATCAC CCCGATCGTC AGCGAACGCT GCGAAGTGCG CCTGAAGGAC GAACGTGCCG ACAAACGTCT GGCCCACTGG CGCCAAGTGG CGATCAGTGC CTGCGAACAA TGCGGGCGCT CAACCTTGCC GGTCATCCAC CCACCCGTGC CCCTAACCGA GTGGCTGAGC AGCACTCAGG CTGACCTGAA GCTGGTCCTG CACCCGGTGG CCGAACCGCT CACCAGCCAT GCCAAGCCTG CAGGCCTGGC CTTCCTGATC GGCCCCGAAG GCGGCCTTAG CGAAGCCGAA GTCGAACAGG CCAAAGCCGC CGGTTTCCAC GCAGCACGCC TTGGCCCACG CGTGCTGCGC ACCGAAACCG CGCCGGTGGT GGCGCTGTCG GTGGCACAGC AGCTGTGGGG CGACTTTTAA
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Protein sequence | MRLSRFFIDA PLSLGEHDLP EAQAHYIGRV LRMAPGDAVQ LFDGSGQEYL GQLLEVGKKT VRVSLDQALT GQADSPLHVH LGQGLSRGER MDWAIQKATE LGANEITPIV SERCEVRLKD ERADKRLAHW RQVAISACEQ CGRSTLPVIH PPVPLTEWLS STQADLKLVL HPVAEPLTSH AKPAGLAFLI GPEGGLSEAE VEQAKAAGFH AARLGPRVLR TETAPVVALS VAQQLWGDF
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