Gene PputGB1_5035 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPputGB1_5035 
Symbol 
ID5872850 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePseudomonas putida GB-1 
KingdomBacteria 
Replicon accessionNC_010322 
Strand
Start bp5623989 
End bp5624708 
Gene Length720 bp 
Protein Length239 aa 
Translation table11 
GC content67% 
IMG OID641550173 
Product16S ribosomal RNA methyltransferase RsmE 
Protein accessionYP_001671255 
Protein GI167036024 
COG category[S] Function unknown 
COG ID[COG1385] Uncharacterized protein conserved in bacteria 
TIGRFAM ID[TIGR00046] RNA methyltransferase, RsmE family 


Plasmid Coverage information

Num covering plasmid clones32 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones40 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACTGT CCCGCTTCTT CATCGACGCC CCCCTGAGCC TTGGCGAACA CGACCTGCCC 
GAGGCCCAGG CCCACTACAT CGGCCGCGTG CTGCGCATGG CCCCCGGCGA CGCCGTGCAG
CTGTTCGACG GCAGCGGCCA GGAATACCTC GGCCAACTGC TTGAAGTGGG CAAGAAAACC
GTGCGTGTCA GCCTCGACCA AGCCCTCACC GGCCAGGCCG ACTCACCGCT GCACGTGCAC
CTCGGCCAAG GCCTGTCGCG CGGCGAACGC ATGGACTGGG CGATCCAGAA GGCCACCGAA
CTGGGCGCCA ACGAAATCAC CCCGATCGTC AGCGAACGCT GCGAAGTGCG CCTGAAGGAC
GAACGTGCCG ACAAACGTCT GGCCCACTGG CGCCAAGTGG CGATCAGTGC CTGCGAACAA
TGCGGGCGCT CAACCTTGCC GGTCATCCAC CCACCCGTGC CCCTAACCGA GTGGCTGAGC
AGCACTCAGG CTGACCTGAA GCTGGTCCTG CACCCGGTGG CCGAACCGCT CACCAGCCAT
GCCAAGCCTG CAGGCCTGGC CTTCCTGATC GGCCCCGAAG GCGGCCTTAG CGAAGCCGAA
GTCGAACAGG CCAAAGCCGC CGGTTTCCAC GCAGCACGCC TTGGCCCACG CGTGCTGCGC
ACCGAAACCG CGCCGGTGGT GGCGCTGTCG GTGGCACAGC AGCTGTGGGG CGACTTTTAA
 
Protein sequence
MRLSRFFIDA PLSLGEHDLP EAQAHYIGRV LRMAPGDAVQ LFDGSGQEYL GQLLEVGKKT 
VRVSLDQALT GQADSPLHVH LGQGLSRGER MDWAIQKATE LGANEITPIV SERCEVRLKD
ERADKRLAHW RQVAISACEQ CGRSTLPVIH PPVPLTEWLS STQADLKLVL HPVAEPLTSH
AKPAGLAFLI GPEGGLSEAE VEQAKAAGFH AARLGPRVLR TETAPVVALS VAQQLWGDF